Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(516,316)		   Primates
(5,042)		   Rodents
(188,439)		   Mammals
(16,727)		   Vertebrates
(18,617)		   Invertebrates
(38,231)		   Plants
(93,098)		   Bacteria
(39,426)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,385)		   All
(924,376)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(7,463)		   Tiling Array
(684)		   cDNA Array
(10,536)		   Oligo Array
(19,784)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(51)		   HT-Seq
(851)		   Other
(57)		   All
(39,426)		  
  brain
(118)		   blood
(703)		   connective
(173)		   reproductive
(108)		   muscular
(90)		   digestive
(772)		   liver
(78)		   lung
(255)		   urinary
(19)		   endo/exo-crine
(198)		   embryo
(25)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(217)		   unclassified
(36,670)		   all
(39,426)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM862631 EspR_ChIP-Seq_1 0 EPFL 2012-01-17 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 peripheral blood Chromatin IP against EspR The rat anti-EspR antibody was produced by our collaborator Ida Rosenkrands at the STATENS SERUM INSTITUT (Danemark).
2 GSM862632 EspR_ChIP-Seq_2 0 EPFL 2012-01-17 [HT Sequencing] Illumina Genome Analyzer IIx (Mycobacterium tuberculosis) (GPL15138) SRA Mycobacterium tuberculosis
Mycobacterium tuberculosis		 peripheral blood Chromatin IP against EspR The rat anti-EspR antibody was produced by our collaborator Ida Rosenkrands at the STATENS SERUM INSTITUT (Danemark).
3 GSM991202 del hns; replicate 1 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns; replicate 1
4 GSM991203 del hns; replicate 2 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns; replicate 2
5 GSM991204 del stpA; replicate 1 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del stpA; replicate 1
6 GSM991205 del stpA; replicate 2 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del stpA; replicate 2
7 GSM991206 del hha; replicate 1 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hha; replicate 1
8 GSM991207 del hha; replicate 2 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hha; replicate 2
9 GSM991208 del ydgT; replicate1 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del ydgT; replicate1
10 GSM991209 del ydgT; replicate 2 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del ydgT; replicate 2
11 GSM991210 del hns, stpA; replicate 1 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns, stpA; replicate 1
12 GSM991211 del hns, stpA; replicate 2 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns, stpA; replicate 2
13 GSM991212 del hns, hha; replicate 1 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns, hha; replicate 1
14 GSM991213 del hns, hha; replicate 2 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns, hha; replicate 2
15 GSM991214 del hns, ydgT; replicate 1 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns, ydgT; replicate 1
16 GSM991215 del hns, ydgT; replicate 2 0 EMBL-EBI 2012-08-23 [HT Sequencing] Illumina HiSeq 1000 (Escherichia coli str. K-12 substr. MG1655) (GPL15982) SRA Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655		 peripheral blood del hns, ydgT; replicate 2
17 GSM635865 BAPHK_cDNA1 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
18 GSM635866 BAPHK_cDNA2 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
19 GSM635883 BAPHK_cDNA3 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
20 GSM635902 BAPHK_R15 transcriptome profile 409,807 The Forsyth Institute 2010-12-07 [Tiling Array] Porphyromonas gingivalis W83 genomic tiling array mapped format (GPL11291) RNA Porphyromonas gingivalis
Porphyromonas gingivalis		 peripheral blood Laboratory culture on BAPHK blood plate
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