Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Bacteria
(39,082)

Viruses
(1,266)

Phages
(101)

Unclassified
(5,242)

All
(898,944)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

All
(39,082)

connective
(0)

reproductive
(0)

muscular
(0)

digestive
(0)

liver
(0)

lung
(0)

urinary
(0)

endo/exo-crine
(0)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(0)

unclassified
(0)

all
(39,082)

	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM999270	telavancin resistant strain vs. parent strain-rep3	5,087	Illinois State University	2012-09-07	[Oligo Array] JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain COL (GPL10591)	RNA	Staphylococcus aureus	unclassified	source_name:sample collected at OD600 at 0.4 title:telavancin resistant strain vs. parent strain-rep3 description:Analysis used MED1951 RNA as control samples for comparison to MED1952 S. aureus RNA samples.
2	GSM999269	telavancin resistant strain vs. parent strain-rep2	5,087	Illinois State University	2012-09-07	[Oligo Array] JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain COL (GPL10591)	RNA	Staphylococcus aureus	unclassified	source_name:sample collected at OD600 at 0.4 title:telavancin resistant strain vs. parent strain-rep2 description:Analysis used MED1951 RNA as control samples for comparison to MED1952 S. aureus RNA samples.
3	GSM999268	telavancin resistant strain vs. parent strain-rep1	5,087	Illinois State University	2012-09-07	[Oligo Array] JCVI PFGRC Staphylococcus aureus 16K v9 array designed primarily based on strain COL (GPL10591)	RNA	Staphylococcus aureus	unclassified	source_name:sample collected at OD600 at 0.4 title:telavancin resistant strain vs. parent strain-rep1 description:Analysis used MED1951 RNA as control samples for comparison to MED1952 S. aureus RNA samples.
4	GSM999252	E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep2	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 4h of treatment title:E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep2 description:Gene expression data from cinnamaldehyde treatment at 4 h
5	GSM999251	E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep1	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 4h of treatment title:E. coli O157:H7 at 4 h cinnamaldehyde treatment biological rep1 description:Gene expression data from cinnamaldehyde treatment at 4 h
6	GSM999250	E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep2	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 2h of treatment title:E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep2 description:Gene expression data from cinnamaldehyde treatment at 2 h
7	GSM999249	E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep1	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 treated with 200 mg/l cinnamaldehyde, sampled at 2h of treatment title:E. coli O157:H7 at 2 h cinnamaldehyde treatment biological rep1 description:Gene expression data from cinnamaldehyde treatment at 2 h
8	GSM999248	E. coli O157:H7 at 4 h control biological rep2	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 control, sampled at 4h of treatment title:E. coli O157:H7 at 4 h control biological rep2 description:Gene expression data from control at 4 h
9	GSM999247	E. coli O157:H7 at 4 h control biological rep1	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 control, sampled at 4h of treatment title:E. coli O157:H7 at 4 h control biological rep1 description:Gene expression data from control at 4 h
10	GSM999246	E. coli O157:H7 at 2 h control biological rep2	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 control, sampled at 2h of treatment title:E. coli O157:H7 at 2 h control biological rep2 description:Gene expression data from control at 2 h
11	GSM999245	E. coli O157:H7 at 2 h control biological rep1	10,208	University of Manitoba	2012-09-07	[GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154)	RNA	Escherichia coli O157:H7	unclassified	source_name:E. coli O157:H7 control, sampled at 2h of treatment title:E. coli O157:H7 at 2 h control biological rep1 description:Gene expression data from control at 2 h
12	GSM999080	SCV, 48h, rep3	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:PA01-SCV late (48h) stationary phase title:SCV, 48h, rep3 description:Gene expression data from PA01-SCV at 48hours, late stationary phase
13	GSM999079	SCV, 48h, rep2	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:PA01-SCV late (48h) stationary phase title:SCV, 48h, rep2 description:Gene expression data from PA01-SCV at 48hours, late stationary phase
14	GSM999078	SCV, 48h, rep1	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:PA01-SCV late (48h) stationary phase title:SCV, 48h, rep1 description:Gene expression data from PA01-SCV at 48hours, late stationary phase
15	GSM999077	SCV, 24h, rep3	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:PA01-SCV early (24h) stationary phase title:SCV, 24h, rep3 description:Gene expression data from PA01-SCV at 24hours, early stationary phase
16	GSM999076	SCV, 24h, rep2	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:PA01-SCV early (24h) stationary phase title:SCV, 24h, rep2 description:Gene expression data from PA01-SCV at 24hours, early stationary phase
17	GSM999075	SCV, 24h, rep1	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:PA01-SCV early (24h) stationary phase title:SCV, 24h, rep1 description:Gene expression data from PA01-SCV at 24hours, early stationary phase
18	GSM999074	WT, 48h, rep3	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:WT late (48h) stationary phase title:WT, 48h, rep3 description:Gene expression data from WT at 48hours, late stationary phase
19	GSM999073	WT, 48h, rep2	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:WT late (48h) stationary phase title:WT, 48h, rep2 description:Gene expression data from WT at 48hours, late stationary phase
20	GSM999072	WT, 48h, rep1	5,900	University of Nottingham	2012-09-06	[GeneChip] [Pae_G1a] Affymetrix Pseudomonas aeruginosa Array (GPL84)	RNA	Pseudomonas aeruginosa	unclassified	source_name:WT late (48h) stationary phase title:WT, 48h, rep1 description:Gene expression data from WT at 48hours, late stationary phase