Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(8,349)
  Tiling Array
(1,464)
  cDNA Array
(10,807)
  Oligo Array
(21,920)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(51)
  HT-Seq
(2,336)
  Other
(164)
  All
(45,091)
 
  brain
(119)
  blood
(808)
  connective
(191)
  reproductive
(151)
  muscular
(90)
  digestive
(1,593)
  liver
(79)
  lung
(261)
  urinary
(20)
  endo/exo-crine
(204)
  embryo
(42)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(320)
  unclassified
(41,213)
  all
(45,091)
 
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1058581 K96243_pH7_1 (Cy3) 389,307 Genome Institute of Singapore 2012-12-30 [Tiling Array] NimbleGen Burkholderia pseudomallei K96243 385K tiling array [071211_BPK96243_CO_Tiling] (GPL16432) RNA Burkholderia pseudomallei K96243
Burkholderia pseudomallei K96243
kidney SAMPLE 293
2 GSM574246 KMD 1 10,208 Tufts University 2010-08-04 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
kidney cDNA made from strain KMD extracted from mouse kidney on day 2 post infection
3 GSM574247 KMD 2 10,208 Tufts University 2010-08-04 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
kidney cDNA made from strain KMD extracted from mouse kidney on day 2 post infection
4 GSM574248 KMD 3 10,208 Tufts University 2010-08-04 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
kidney cDNA made from strain KMD extracted from mouse kidney on day 2 post infection
5 GSM574249 PC 1 10,208 Tufts University 2010-08-04 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
kidney cDNA made from strain PC1012(marArobsoxS) extracted from mouse kidney on day 2 post infection
6 GSM574250 PC 2 10,208 Tufts University 2010-08-04 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
kidney cDNA made from strain PC1012(marArobsoxS) extracted from mouse kidney on day 2 post infection
7 GSM574251 PC 3 10,208 Tufts University 2010-08-04 [GeneChip] [E_coli_2] Affymetrix E. coli Genome 2.0 Array (GPL3154) RNA Escherichia coli
Escherichia coli
kidney cDNA made from strain PC1012(marArobsoxS) extracted from mouse kidney on day 2 post infection
8 GSM590052 5130 6,209 Flanders Institute for Biotechnology (VIB) 2010-09-02 [Oligo Array] SBO_LAB_2k_version2 (GPL10874) RNA Lactobacillus plantarum
Lactobacillus plantarum
kidney 291 L plantarum G3 pH4.5 293 L plantarum G6 pH5.0
9 GSM590053 5131 6,209 Flanders Institute for Biotechnology (VIB) 2010-09-02 [Oligo Array] SBO_LAB_2k_version2 (GPL10874) RNA Lactobacillus plantarum
Lactobacillus plantarum
kidney 293 L plantarum G6 pH5.0 295 L plantarum G7 pH5.5
10 GSM84356 TC1 24HR 4,608 Stanford Microarray Database (SMD) 2005-11-18 [cDNA Array] HP_002 (GPL15) RNA Helicobacter pylori
Helicobacter pylori
bladder Original SS1 RNA T24 RNA
11 GSM652318 MED4 with iron at t24, biological rep1 3,897 MIT 2011-01-10 [GeneChip] Prochlorococcus microarray 11K (GPL11412) RNA Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus marinus subsp. pastoris str. CCMP1986
bladder MED4 with iron at t24, biological rep1
12 GSM652319 MED4 with iron at t24, biological rep2 3,897 MIT 2011-01-10 [GeneChip] Prochlorococcus microarray 11K (GPL11412) RNA Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus marinus subsp. pastoris str. CCMP1986
bladder MED4 with iron at t24, biological rep2
13 GSM652320 MED4 without iron at t24, biological rep1 3,897 MIT 2011-01-10 [GeneChip] Prochlorococcus microarray 11K (GPL11412) RNA Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus marinus subsp. pastoris str. CCMP1986
bladder MED4 without iron at t24, biological rep1
14 GSM652321 MED4 without iron at t24, biological rep2 3,897 MIT 2011-01-10 [GeneChip] Prochlorococcus microarray 11K (GPL11412) RNA Prochlorococcus marinus subsp. pastoris str. CCMP1986
Prochlorococcus marinus subsp. pastoris str. CCMP1986
bladder MED4 without iron at t24, biological rep2
15 GSM605604 qRT-PCR on Staphylococcus aureus strain TB15 in kidney 2,647 J Craig Venter Institute 2010-10-06 [RT-PCR] PFGRC Staphylococcus_aureus_full_genome_RT-PCR (GPL10963) RNA Staphylococcus aureus
Staphylococcus aureus
kidney Staphylococcus aureus strain TB-15 during mouse kidney infection
16 GSM605605 qRT-PCR on Staphylococcus aureus strain US300 in kidney 2,647 J Craig Venter Institute 2010-10-06 [RT-PCR] PFGRC Staphylococcus_aureus_full_genome_RT-PCR (GPL10963) RNA Staphylococcus aureus
Staphylococcus aureus
kidney Staphylococcus aureus strain US300 during mouse kidney infection
17 GSM451946 Strain a704 replicate 1 15,360 University of Wuerzburg 2009-09-11 [Oligo Array] Wuerzburg Neisseria meningitidis 15.4K (GPL8787) genomic Neisseria meningitidis
Neisseria meningitidis
kidney Strain a704 replicate 1
18 GSM451947 Strain a704 replicate 2 15,360 University of Wuerzburg 2009-09-11 [Oligo Array] Wuerzburg Neisseria meningitidis 15.4K (GPL8787) genomic Neisseria meningitidis
Neisseria meningitidis
kidney Strain a704 replicate 2
19 GSM451948 Strain a704 replicate 3 15,360 University of Wuerzburg 2009-09-11 [Oligo Array] Wuerzburg Neisseria meningitidis 15.4K (GPL8787) genomic Neisseria meningitidis
Neisseria meningitidis
kidney Strain a704 replicate 3
20 GSM240935 K1127 7244-293vsRef 5,369 DSO National Laboratories 2007-11-01 [cDNA Array] DSO/GIS lab Full_Burkholderia_pseudomallei_Genome v2 (GPL6073) genomic Burkholderia pseudomallei,Burkholderia pseudomallei K96243
Burkholderia pseudomallei,Burkholderia pseudomallei K96243
kidney Strain: K1127 7244-293 Reference: Strain K96243