Gene Expression Omnibus (GEO) Overview

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Bacteria
(39,082)

Viruses
(1,266)

Phages
(101)

Unclassified
(5,242)

All
(898,944)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(7,355)

Tiling Array
(676)

cDNA Array
(10,532)

Oligo Array
(19,682)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

muscular
(0)

digestive
(309)

embryo
(0)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(45)

unclassified
(9,893)

all
(10,532)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM258491	wild type array 3 subarray 3	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
2	GSM258490	wild type array 3 subarray 2	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
3	GSM258489	wild type array 3 subarray 1	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
4	GSM258488	wild type array 2 subarray 3	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
5	GSM258487	wild type array 2 subarray 2	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
6	GSM258486	wild type array 2 subarray 1	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
7	GSM258485	wild type array 1 subarray 3	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
8	GSM258484	wild type array 1 subarray 2	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
9	GSM258483	wild type array 1 subarray 1	5,776	Case Western Reserve Univeristy	2008-01-22	[cDNA Array] STv7bS_MMCC (GPL4805)	mixed	Salmonella enterica subsp. enterica serovar Typhimurium	intestine	CorA is the primary Mg2+ channel in Salmonella enterica serovar Typhimurium. Cells were collected for RNA isolation on three separate days from wild type or corA strains giving six total samples from three independent cultures for each strain. Genomic DNA from wild type was used as a reference on each slide.
10	GSM143461	vcc722 rabbit experiment 24	5,760	Stanford Microarray Database (SMD)	2006-11-02	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log in LB RNA (2 ug) wt RNA (from vibrio in ileal loop fluid) 12h rabbit
11	GSM143458	vcc721 rabbit experiment 24	5,760	Stanford Microarray Database (SMD)	2006-11-02	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log in LB RNA (2 ug) wt RNA (from vibrio in ileal loop fluid) 12h rabbit
12	GSM143457	vcc702 rabit exp 16	5,760	Stanford Microarray Database (SMD)	2006-11-02	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log reference RNA wt RNA (from vibrio in ileal loop fluid) 12h rabbit
13	GSM601469	vcc693 rabit exp 16	5,760	Stanford Microarray Database (SMD)	2010-09-28	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	Simple annotation: Enteric environment, Infection Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/41439.gif
14	GSM601477	vcc688 rabit exp 17	5,760	Stanford Microarray Database (SMD)	2010-09-28	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log reference RNA/ rabbit RNA (1:2) wt RNA (from vibrio in ileal loop fluid) 8h rabbit
15	GSM601474	vcc523 rabit exp 16	5,760	Stanford Microarray Database (SMD)	2010-09-28	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	Simple annotation: Enteric environment, Infection Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/41435.gif
16	GSM143460	vcc1452 rabbit experiment 24	5,760	Stanford Microarray Database (SMD)	2006-11-02	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log in LB RNA (2 ug) wt RNA (from vibrio in ileal loop fluid) 12h rabbit
17	GSM143463	vcc1451 rabbit experiment 24	5,760	Stanford Microarray Database (SMD)	2006-11-02	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log in LB RNA (2 ug) wt RNA (from vibrio in ileal loop fluid) 12h rabbit
18	GSM143459	vcc1136 rabit exp 16	5,760	Stanford Microarray Database (SMD)	2006-11-02	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log reference RNA wt RNA (from vibrio in ileal loop fluid) 12h rabbit
19	GSM143464	vcc1135 rabit exp 16	5,760	Stanford Microarray Database (SMD)	2006-11-02	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	wt mid log reference RNA wt RNA (from vibrio in ileal loop fluid) 12h rabbit
20	GSM601461	vcc1133 rabit exp 17	5,760	Stanford Microarray Database (SMD)	2010-09-28	[cDNA Array] VCholerae_A (GPL2742)	RNA	Vibrio cholerae	intestine	Simple annotation: Enteric environment, Infection Image: http://smd.stanford.edu/MicroArray/gifs/2003-05/41422.gif

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