Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(310)		   Tiling Array
(702)		   cDNA Array
(1,050)		   Oligo Array
(1,326)		   Bead Array
(119)		   Protein Array
(1)		   Antibody
(20)		   RT-PCR
(82)		   HT-Seq
(50)		   Other
(36)		   All
(3,705)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16786 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENSG version 13.0.0] 23,021 NCBI/NLM/NIH 2013-03-13 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENSG version 13.0.0], Probe set data extracted from custom CDF (HuGene10stv1_Hs_ENSG.cdf v13.0.0). See below web link for CDF and other related files.
2 GPL16686 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version] 53,981 Affymetrix, Inc. 2013-02-14 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv
3 GPL16522 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENTREZG_15.1.0] 19,684 NCBI/NLM/NIH 2013-01-17 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_Hs_ENTREZG_15.1.0], Brainarray: HuGene10stv1_Hs_ENTREZG_15.1.0
4 GPL16356 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG 15.0.0] 18,926 NCBI/NLM/NIH 2012-12-05 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG 15.0.0], This array is identical to GPL570 but the data were analyzed with a custom CDF environment.
5 GPL16341 [HuEx10stv2_Hs_ENSE] Affymetrix Human Exon 1.0 ST Array [Brainarray Version 11.0.1] 232,376 NCBI/NLM/NIH 2012-11-29 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuEx10stv2_Hs_ENSE] Affymetrix Human Exon 1.0 ST Array [Brainarray Version 11.0.1], This platform is identical to GPL5175 but a custom CDF environment was used to extract data [Brainarray Version 11.0.1, HuEx10stv2_Hs_ENSG].
6 GPL16340 [HuEx10stv2_Hs_ENST] Affymetrix Human Exon 1.0 ST Array [Brainarray Version 11.0.1] 45,439 NCBI/NLM/NIH 2012-11-29 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuEx10stv2_Hs_ENST] Affymetrix Human Exon 1.0 ST Array [Brainarray Version 11.0.1], This platform is identical to GPL5175 but a custom CDF environment was used to extract data [Brainarray Version 11.0.1, HuEx10stv2_Hs_ENSG].
7 GPL16332 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [MMBGX-Ensembl64] 28,875 University of California, San Francisco 2012-11-28 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [MMBGX-Ensembl64], This platform contains certain probeset groupings used for analysis with the MMBGX software platform (PMID 19854940) http://www.bgx.org.uk/software/mmbgx.html For data processing, the MMBGX software suite uses raw data CEL files directly as input.
8 GPL16329 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [HuEx-1_0-st-v2.r2 ENST] 42,187 Molecular Medicine Institute 2012-11-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [HuEx-1_0-st-v2.r2 ENST], This is identical to GPL5175 but a custom CDF environment was used to extract data. The probe group file can be found below. Annotation is based on genome build hg18
9 GPL16311 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG 14.0.0] 19,070 NCBI/NLM/NIH 2012-11-21 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG 14.0.0], This array is identical to GPL570 but the data were analyzed with a custom CDF environment.
10 GPL16293 Affymetrix Human GeneChip GGH 3_0v1 Array 1,172,413 Affymetrix Inc 2012-11-16 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human GeneChip GGH 3_0v1 Array,
11 GPL16273 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray ENSG Version 15] 19,081 NCBI/NLM/NIH 2012-11-13 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray ENSG Version 15], This is identical to GPL570 but a custom CDF environment was used to extract data [Brainarray Version 15, HGU133Plus2_Hs_ENSG].
12 GPL16268 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray ENSG Version 16] 19,598 NCBI/NLM/NIH 2012-11-09 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray ENSG Version 16], This is identical to GPL570 but a custom CDF environment was used to extract data [Brainarray Version 16, HGU133Plus2_Hs_ENSG].
13 GPL16267 [skychip1d520579] Affymetrix Human AMLprofiler Array 133 Skyline Diagnostics 2012-11-09 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [skychip1d520579] Affymetrix Human AMLprofiler Array, It is an RNA chip, however, we employ the SNP algorithm DM from the Affymetrix Power tools.
14 GPL16254 [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [exon-level] 554,900 Sanford Burnham Medical Research Institute 2012-11-07 Affymetrix Inc Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [exon-level],
15 GPL16238 [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [transcript-level] 35,123 Sanford Burnham Medical Research Institute 2012-11-02 Affymetrix Inc Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [transcript-level],
16 GPL16240 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: CHOP_1.0_ENTREZG] 20,788 Children's Hospitla of Philadelphia 2012-11-02 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: CHOP_1.0_ENTREZG], Probe sequences were downloaded from Affymetrix web site and mapped human genome hg19. Probes having mismatch, ambiguous mapping, or overlapping to dbSNP entries were excluded. The remaining probes were grouped into NCBI Entrez genes.
17 GPL16163 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [HuEx10stv2_Hs_ENST_14.1.0] 144,964 Seattle Biomedical Research Institute 2012-10-10 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [HuEx10stv2_Hs_ENST_14.1.0], This is identical to GPL5175 but a custom CDF environment was used to extract data. The CDF can be found at the link below.
18 GPL16131 [CytoScanHD_Array] Affymetrix CytoScan HD Array 2,822,125 Affymetrix, Inc. 2012-10-03 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [CytoScanHD_Array] Affymetrix CytoScan HD Array, #%create_date=2011-12-01 GMT-08:00 10:25:44 #%chip_type=CytoScanHD_Array #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%dbSNP_date=2010-09-23 #%dbSNP_version=132 #%dgv-date=2010-10-00 #%dgv-version=10 #%hapmap-date=2008-01-08 #%hapmap-version=23 #%netaffx-annotation-date=2011-12-01 #%netaffx-annotation-netaffx-build=32.1 #%netaffx-annotation-tabular-format-version=1.0 #%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver #%netaffx-annotation-docgen-version=cluster_friendly_submission #%create_date=2011-12-01 GMT-08:00 10:25:09 #%chip_type=CytoScanHD_Array #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%dbSNP_date=2010-09-23 #%dbSNP_version=132 #%dgv-date=2010-10-00 #%dgv-version=10 #%netaffx-annotation-date=2011-12-01 #%netaffx-annotation-netaffx-build=32.1 #%netaffx-annotation-tabular-format-version=1.0 #%netaffx-annotation-docgen-method=com.affymetrix.database.docgen.DocGenDriver #%netaffx-annotation-docgen-version=cluster_friendly_submission ##This database/product contains information from the Online Mendelian Inheritance in Man(R) (OMIM(R)) database, which has been obtained under a license from the Johns Hopkins University. This database/product does not represent the entire, unmodified OMIM(R) database, which is availa ble in its entirety at www.ncbi.nlm.nih.gov/omim/.
19 GPL16100 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: GATExplorer_Ensembl v57] 20,596 Cancer Research Center (CIC-IBMCC, CSIC/USAL) 2012-09-25 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: GATExplorer_Ensembl v57], The probes were mapped to GENE LOCi by the CDF built by GATExplorer http://bioinfow.dep.usal.es/xgate/principal.php http://bioinfow.dep.usal.es/xgate/mapping/mapping.php The CDF file is designed to install as 'R' package; 'genemapperhgu133plus2cdf_3.0.tar.gz' available at: http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=rprogram
20 GPL16043 GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs) 49,495 Whitehead Institute for Biomedical Research 2012-09-11 Affymetrix, Inc. Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs),
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