Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(5)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(2)
  GeneChip
(367)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(0)
  Bead Array
(138)
  Protein Array
(1)
  Antibody
(24)
  RT-PCR
(128)
  HT-Seq
(0)
  Other
(51)
  All
(3,985)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL18476 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [hugene20st_Hs_ENSG] 32,633 NCBI/NLM/NIH 2014-03-27 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [hugene20st_Hs_ENSG], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv
2 GPL18478 [HG_U133A 2.0_Hs_ENTREZG_V13] Affymetrix GeneChip HG_U133 V2.0 Array [Brainarray Entrez Version 13] 12,065 NCBI/NLM/NIH 2014-03-27 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG_U133A 2.0_Hs_ENTREZG_V13] Affymetrix GeneChip HG_U133 V2.0 Array [Brainarray Entrez Version 13],
3 GPL18441 [Axiom_GW_Hu_SNP] Affymetrix Axiom Genome-Wide CEU 1 Array Plate 0 Affymetrix, Inc. 2014-03-19 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Axiom_GW_Hu_SNP] Affymetrix Axiom Genome-Wide CEU 1 Array Plate, ##For information about the Annotation file content, please see the bundled README file. #%create_date=2013-09-10 GMT-08:00 15:47:36 #%chip_type=Axiom_GW_Hu_SNP #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=37 #%genome-version-create_date=2009-02-00 #%mitochondrion-version=NC_001807 #%dbSNP-date=2012-06-26 #%dbSNP-version=137 #%hapmap-date=2008-01-08 #%hapmap-version=23 #%omim-date=2013-07-09 #%allele_frequency_data_reference=1KGp1_mar2012 #%netaffx-annotation-date=2013-07-01 #%netaffx-annotation-netaffx-build=34 #%netaffx-annotation-tabular-format-version=1.5
4 GPL18401 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [AltAnalyze probeset-to-Ensembl mapping] 25,465 gladstone institute of cardiovascular disease 2014-03-11 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [AltAnalyze probeset-to-Ensembl mapping], Ensembl 65 database, Genome build Hg18. AltAnalyze constitutive annotated probesets
5 GPL18121 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (custom CDF) 26,954 NIH 2013-12-30 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (custom CDF), Alternative CDF's were generated by masking probes which showed non-specific hybridization towards mouse in the human arrays and vice versa. Briefly, using raw intensity signals from cel files, individual probes were filtered if they met the following criteria: the net intensity (PM-MM) of each probe pair from the cross-reactive species was less than 10 and greater than 50% of the corresponding signal from human tumor core. Alternatively, to detect cross-reactive human signal on the mouse microarrays, mouse chips were hybridized with pure human cell line RNA and the corresponding same criteria were applied. The remaining probes were grouped into their original probe sets and those that had at least 4 remaining probes were retained in the new chip definition file (cdf). This resulted in alternative cdf’s containing 26,954 probe sets for the HG-U133 plus2 array and 21,675 probe sets for the Mouse430_2 array.
6 GPL18080 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [hjay.r1 version] 0 CEIT 2013-12-17 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [hjay.r1 version], probe group file: hjay.r1.pgf meta-probeset file: hjay.r1.mps
7 GPL18029 Affymetrix Gene Human Arrays 1.0 ST 19,793 University Medicine of Goettingen 2013-12-05 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix Gene Human Arrays 1.0 ST,
8 GPL18033 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array [HGU133A2_Hs_ENTREZG_17.0.0] 12,030 NCBI/NLM/NIH 2013-12-05 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array [HGU133A2_Hs_ENTREZG_17.0.0], Brainarray: HGU133A2_Hs_ENTREZG_17.0.0
9 GPL18034 [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array [HGU133A2_Hs_ENTREZG_17.1.0] 12,030 NCBI/NLM/NIH 2013-12-05 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG-U133A_2] Affymetrix Human Genome U133A 2.0 Array [HGU133A2_Hs_ENTREZG_17.1.0], Brainarray: HGU133A2_Hs_ENTREZG_17.1.0
10 GPL17996 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (custom CDF: HGU133Plus2_Hs_ENTREZG.cdf version 15.1.0) 18,988 NCBI/NLM/NIH 2013-11-26 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (custom CDF: HGU133Plus2_Hs_ENTREZG.cdf version 15.1.0), This array is identical to GPL570 but the data were analyzed with a custom CDF environment.
11 GPL17977 [Axiom_GW_EUR] Affymetrix Axiom Genome-Wide EUR 1 Array Plate 0 Affymetrix, Inc. 2013-11-22 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Axiom_GW_EUR] Affymetrix Axiom Genome-Wide EUR 1 Array Plate, ##For information about the Annotation file content, please see the bundled README file. #%create_date=2013-09-12 GMT-08:00 09:12:32 #%chip_type=Axiom_KP_UCSF_EUR #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=37 #%genome-version-create_date=2009-02-00 #%mitochondrion-version=NC_001807 #%dbSNP-date=2012-06-26 #%dbSNP-version=137 #%hapmap-date=2008-01-08 #%hapmap-version=23 #%omim-date=2013-07-09 #%allele_frequency_data_reference=1KGp1_mar2012 #%netaffx-annotation-date=2013-07-01 #%netaffx-annotation-netaffx-build=34 #%netaffx-annotation-tabular-format-version=1.5
12 GPL17930 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_17.0.0] 23,786 NCBI/NLM/NIH 2013-11-14 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_17.0.0], Brainarray: HuGene20stv1_Hs_ENTREZG_17.0.0
13 GPL17929 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HG-U133_plus2,TCGAmin5] 17,256 Memorial Sloan-Kettering Cancer Center 2013-11-14 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HG-U133_plus2,TCGAmin5], CDF file (HG-U133_Plus_2) from The Cancer Genome Atlas (https://tcga-data.nci.nih.gov/tcga/tcgaPlatformDesign.jsp)
14 GPL17897 [HT_HG-U133A] Affymetrix Human Genome U133A Array (custom CDF: HTHGU133A_Hs_ENTREZG.cdf version 17.0.0) 12,092 Affymetrix, Inc. 2013-11-06 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HT_HG-U133A] Affymetrix Human Genome U133A Array (custom CDF: HTHGU133A_Hs_ENTREZG.cdf version 17.0.0), Identical to GPL3921 but used a custom CDF
15 GPL17889 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_16.0.0] 24,092 NCBI/NLM/NIH 2013-11-05 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_16.0.0], Brainarray: HuGene20stv1_Hs_ENTREZG_16.0.0
16 GPL17867 [Hu03Plusa520637F] Affymetrix Human Eos Hu03plus Array 59,463 AbbVie Biotherapeutics Inc. 2013-10-30 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Hu03Plusa520637F] Affymetrix Human Eos Hu03plus Array,
17 GPL17860 [DMET_Plus] Affymetrix human DMET Plus array 1,936 Kinki university School of Medicine 2013-10-29 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [DMET_Plus] Affymetrix human DMET Plus array, NCBI human genome build 37. dbSNP version 132.
18 GPL17811 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v17] 18,960 NCBI/NLM/NIH 2013-10-22 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v17], This array is identical to GPL570 but the data were analyzed with a custom CDF environment.
19 GPL17810 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v16] 18,989 NCBI/NLM/NIH 2013-10-21 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray HGU133Plus2_Hs_ENTREZG_v16], This array is identical to GPL570 but the data were analyzed with a custom CDF environment.
20 GPL17737 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_68_020] 112,702 Medical University Innsbruck 2013-09-17 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_68_020], custom CDF: hugene10stv1_68_020.cdf Alternative to GPL6244
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