Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(323)		   Tiling Array
(706)		   cDNA Array
(1,052)		   Oligo Array
(1,352)		   Bead Array
(121)		   Protein Array
(1)		   Antibody
(21)		   RT-PCR
(89)		   HT-Seq
(51)		   Other
(36)		   All
(3,761)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9987 Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENSG v12.1.0] 18,394 University of Turku 2010-01-28 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENSG v12.1.0], Custom CDF (Brainarray v12.1.0)
2 GPL99 [Hu35KsubB] Affymetrix Human 35K SubB Array 8,924 Affymetrix, Inc. 2002-02-19 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [Hu35KsubB] Affymetrix Human 35K SubB Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 35714 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
3 GPL9828 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray Hs133P_Hs_ENTREZG version 10) 17,589 NCBI/NLM/NIH 2009-12-28 Affymetrix Homo sapiens
Homo sapiens		 GeneChip spotted oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: Brainarray Hs133P_Hs_ENTREZG version 10), Custom CDF (Brainarray Entrez Gene v10.0.0)
4 GPL98 [Hu35KsubA] Affymetrix Human 35K SubA Array 8,934 Affymetrix, Inc. 2002-02-19 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [Hu35KsubA] Affymetrix Human 35K SubA Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Has 35714 entries and was indexed 29-Jan-2002. Keywords = high density oligonucleotide array
5 GPL9793 Affymetrix Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A20071112,EP] 337,421 Walter and Eliza Hall Institute of Medical Research 2009-12-11 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A20071112,EP], Probe set data extracted from custom CDF [HuEx-1_0-st-v2,coreR3,A20071112,EP]. #%chip_type=HuEx-1_0-st-v2 #%lib_set_name=HuEx-1_0-st #%lib_set_version=v2 #%genome-species=Homo sapiens #%genome-version-ucsc=hg18 #%genome-version-ncbi=36 #%genome-version-create_date=2006-03 #%netaffx-annotation-date=2008-07-21 #%netaffx-annotation-netaffx-build=26
6 GPL9742 Affymetrix Human Genome U133B Array [CDF: XLab gahgu133b_1.5.0] 6,771 Steinbeis Transfer Center for Proteome Analysis 2009-12-02 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Genome U133B Array [CDF: XLab gahgu133b_1.5.0], NCBI36/hg18 assembly
7 GPL9741 Affymetrix Human Genome U133A Array [CDF: XLab gahgu133a_1.5.0] 11,220 Steinbeis Transfer Center for Proteome Analysis 2009-12-02 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Genome U133A Array [CDF: XLab gahgu133a_1.5.0], NCBI36/hg18 assembly
8 GPL9717 [CustOva1a520455F] Affymetrix Homo sapiens 0.6K Custom GeneChip 658 Beth Israel Deaconess Medical Center 2009-11-24 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [CustOva1a520455F] Affymetrix Homo sapiens 0.6K Custom GeneChip, This array contains standard Affymetrix probe sets from U133A
9 GPL9704 [GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1 62,850 University of Cambridge 2009-11-20 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The SNP Array 5.0 is a single microarray featuring all single nucleotide polymorphisms (SNPs) from the original two-chip Mapping 500K Array Set, as well as 420,000 additional non-polymorphic probes that can measure other genetic differences, such as copy number variation. SNPs on the array are present on 200 to 1,100 base pair (bp) Nsp I or Sty I digested fragments in the human genome, and are amplified using the fifth generation of the Whole-genome Sampling Assay (WGSA). Contains SNPs on NC_000001.9 Annotations correspond to hg18 (NCBI 36.1)
10 GPL97 [HG-U133B] Affymetrix Human Genome U133B Array 22,645 Affymetrix, Inc. 2002-02-19 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133B] Affymetrix Human Genome U133B Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
11 GPL96 [HG-U133A] Affymetrix Human Genome U133A Array 22,283 Affymetrix, Inc. 2002-02-19 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133A] Affymetrix Human Genome U133A Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/geo/info/geo_affy.html The U133 set includes 2 arrays with a total of 44928 entries and was indexed 29-Jan-2002. The set includes over 1,000,000 unique oligonucleotide features covering more than 39,000 transcript variants, which in turn represent greater than 33,000 of the best characterized human genes. Sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from Build 133 of UniGene (April 20, 2001) and refined by analysis and comparison with a number of other publicly available databases including the Washington University EST trace repository and the University of California, Santa Cruz golden-path human genome database (April 2001 release). In addition, ESTs were analyzed for untrimmed low-quality sequence information, correct orientation, false priming, false clustering, alternative splicing and alternative polyadenylation. Keywords = high density oligonucleotide array
12 GPL9542 Huang Lab Human 9K CpG Island Spotted Array 8,640 Ohio State University 2009-11-06 Huang Lab using Affymetrix/GMS 417 Arrayer Homo sapiens
Homo sapiens		 GeneChip spotted DNA/cDNA, Huang Lab Human 9K CpG Island Spotted Array,
13 GPL95 [HG_U95E] Affymetrix Human Genome U95E Array 12,639 Affymetrix, Inc. 2002-02-19 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG_U95E] Affymetrix Human Genome U95E Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95). Based on this build and associated annotations, the HG-U95Av2 Array represents approximately 10,000 full-length genes, while arrays B through E represent approximately 50,000 EST clusters. Keywords = high density oligonucleotide array
14 GPL9486 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENST, version 10] 27,004 Edinburgh University 2009-10-26 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENST, version 10], CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on Ensembl Transcript Ids (Ensembl build: 46) was used as source. For the CDF file: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. For detailed description please see the paper and website.
15 GPL9454 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [HGU133Plus2_Hs_ENST (v10) CDF] 25,710 RVC 2009-10-15 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [HGU133Plus2_Hs_ENST (v10) CDF], This is identical to GPL570 but a custom CDF environment was used to extract data. The custom chip definition file (CDF) was based on Ensembl transcript annotation (Hs133P_Hs_ENST_version10.CDF) rather than Affymetrix annotation (Dai et al., PMID: 16284200). The CDF can be found at the link below.
16 GPL9419 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_REFSEQ_10] 22,759 Dana-Farber Cancer Institute 2009-10-09 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_REFSEQ_10], This is identical to GPL570 but a custom CDF environment (Hs133P_Hs_REFSEQ_10) was used to extract data. The CDF can be found at the link below.
17 GPL94 [HG_U95D] Affymetrix Human Genome U95D Array 12,644 Affymetrix, Inc. 2002-02-19 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG_U95D] Affymetrix Human Genome U95D Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95). Based on this build and associated annotations, the HG-U95Av2 Array represents approximately 10,000 full-length genes, while arrays B through E represent approximately 50,000 EST clusters. Keywords = high density oligonucleotide array
18 GPL9392 Affymetrix human mitochondrial array [CDF: FATMITO1a520158F] 4,825 University of Washington 2009-10-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix human mitochondrial array [CDF: FATMITO1a520158F], Mitochondrial gene expression microarray. FATMITO1a520158F
19 GPL9324 Affymetrix GeneChip Human Genome 133 Plus 2.0 Array [CDF: Brainarray Version 11, hgu133plus2hsentrezg] 17,788 lumc 2009-09-30 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome 133 Plus 2.0 Array [CDF: Brainarray Version 11, hgu133plus2hsentrezg], This identical to GPL570 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below. We used the entrez version 11 for HGU-133_plus2.
20 GPL93 [HG_U95C] Affymetrix Human Genome U95C Array 12,646 Affymetrix, Inc. 2002-02-19 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG_U95C] Affymetrix Human Genome U95C Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32
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