Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(323)		   Tiling Array
(706)		   cDNA Array
(1,052)		   Oligo Array
(1,352)		   Bead Array
(121)		   Protein Array
(1)		   Antibody
(21)		   RT-PCR
(89)		   HT-Seq
(51)		   Other
(36)		   All
(3,761)		  
1   |   2   |   3   |   4   |   5      »      [17]
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL14189 Custom Rosetta-Affymetrix Human platform [rmhu01aa520485] 43,737 BC Cancer Research Centre 2011-08-24 Rosetta-Affymetrix Homo sapiens
Homo sapiens		 GeneChip spotted oligonucleotide, Custom Rosetta-Affymetrix Human platform [rmhu01aa520485], Custom Affymetrix array spotted by Rosetta Impharmatics. This array contains 43,737 features corresponding to 39,003 unique accession numbers throughout the genome.
2 GPL9542 Huang Lab Human 9K CpG Island Spotted Array 8,640 Ohio State University 2009-11-06 Huang Lab using Affymetrix/GMS 417 Arrayer Homo sapiens
Homo sapiens		 GeneChip spotted DNA/cDNA, Huang Lab Human 9K CpG Island Spotted Array,
3 GPL8733 DiscovArray human miRNA 13k array [HDDA] 14,215 UC, San Diego 2009-06-17 Ambion Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, DiscovArray human miRNA 13k array [HDDA], Custom-manufactured Affymetrix GeneChip® from Ambion The has-asg-* miRNA_ID identifiers are predicted miRs and not present in miRBase for version 9.2.
4 GPL4253 Affymetrix Research Exon Array 1,359,271 Pacific Biosciences 2006-08-31 Affymetrix, Inc. Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Research Exon Array, 4 Chip set, 49-format, 8um feature pitch. Approximately 1.4 million probesets designed to detect more than 1 million exons. Each probeset has up to 4 PM + MM probepairs. The Research Exon Array annotation is based on the Nov 2002 version of the Human Genome, NCBI Build 33.
5 GPL16043 GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs) 49,495 Whitehead Institute for Biomedical Research 2012-09-11 Affymetrix, Inc. Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs),
6 GPL15207 [PrimeView] Affymetrix Human Gene Expression Array 49,395 Affymetrix, Inc. 2012-02-08 Affymetrix, Inc. Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [PrimeView] Affymetrix Human Gene Expression Array,
7 GPL7280 Pathwork Diagnostics Pathchip 22,300 Pathwork Diagnostics 2008-09-10 Affymetrix, for Pathwork Diagnostics, Inc. Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Pathwork Diagnostics Pathchip, An FDA-cleared GeneChip platform for the Tissue Of Origin (TOO) cancer diagnostic test. Based on Affymetrix U133A array. Keywords = high density oligonucleotide array
8 GPL11319 [hGlue2_0_v1] Glue Grant Human Transcriptome Array version 2.0 (GG-H) [exon-level] 557,413 Stanford Genome Technology Center 2010-12-15 Affymetrix Inc Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [hGlue2_0_v1] Glue Grant Human Transcriptome Array version 2.0 (GG-H) [exon-level], Inflammation and the Host Response to Injury Program
9 GPL16254 [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [exon-level] 554,900 Sanford Burnham Medical Research Institute 2012-11-07 Affymetrix Inc Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [exon-level],
10 GPL16238 [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [transcript-level] 35,123 Sanford Burnham Medical Research Institute 2012-11-02 Affymetrix Inc Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [hGlue_3_0_v1] Glue Grant Human Transcriptome Array version 3.0 (GG-H) [transcript-level],
11 GPL11320 [hGlue2_0_v1] Glue Grant Human Transcriptome Array version 2.0 (GG-H) [transcript-level] 34,844 Stanford Genome Technology Center 2010-12-15 Affymetrix Inc Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [hGlue2_0_v1] Glue Grant Human Transcriptome Array version 2.0 (GG-H) [transcript-level], Inflammation and the Host Response to Injury Program
12 GPL3423 Stanford Denko EOS Human 35K Genechip v1.1 35,409 Stanford University 2006-02-02 Affymetrix / EOS Biotechnology Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Stanford Denko EOS Human 35K Genechip v1.1,
13 GPL6660 Nsp copy number (CN) array (ds2) 6,276,448 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds2), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
14 GPL6659 Nsp copy number (CN) array (ds1) 6,121,086 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds1), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
15 GPL7026 Human Promoter Array 1.0R - NCBI build_35 5,150,820 University of Tokyo 2008-07-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Human Promoter Array 1.0R - NCBI build_35, For data analysis of the associated Samples, we calculated MAT scores based on the hyridization intensity data of the probes within 500bp windows. The coordinate column in the Platform data table represents the chromosome coordinates for the 500bp window center positions.
16 GPL5295 AFFY Human Phase3 v1.0 - C62 4,919,563 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C62,
17 GPL5249 AFFY Human Phase3 v1.0 - C16 4,422,670 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C16,
18 GPL5267 AFFY Human Phase3 v1.0 - C34 4,320,474 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C34,
19 GPL5246 AFFY Human Phase3 v1.0 - C13 4,240,896 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C13,
20 GPL5250 AFFY Human Phase3 v1.0 - C17 4,120,959 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C17,
1   |   2   |   3   |   4   |   5      »      [17]
DBCLS | Site Policies | Contact Us