Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(310)		   Tiling Array
(702)		   cDNA Array
(1,050)		   Oligo Array
(1,326)		   Bead Array
(119)		   Protein Array
(1)		   Antibody
(20)		   RT-PCR
(82)		   HT-Seq
(50)		   Other
(36)		   All
(3,705)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15981 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A20071112,EP] 18,427 Aalborg Hospital 2012-08-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A20071112,EP], Core probe intensities were summarized to gene expression levels by means of the ExonRMAPlm(, mergeGroups=TRUE) function using the customized cdf-file for core transcripts downloaded from below link
2 GPL1855 Affymetrix GeneChip Mapping 10K Early Access Array 8,686 Aarhus University Hospital, Skejby Sygehus 2005-02-08 Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Mapping 10K Early Access Array, The Affymetrix GeneChip Mapping 10K Early Access Array enables genotyping of greater than 10,000 Single Nucleotide Polymorphism (SNP) loci on a single array. The SNPs on the array were chosen from The SNP Consortium (TSC) database. Technical information can be found at the Affymetrix website: http://www.affymetrix.com/support/technical/byprodukt.affx?product=10k Basically, the early access array has the same features as the GeneChip® Human Mapping 10K Array, but as it was an early version a few of the probes have been removed later due to poor performance.
3 GPL8036 Affymetrix GeneChip Universal 70K Tag Array 50,000 Affymetrix 2009-01-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Universal 70K Tag Array, This array should be used together with the MIP (Molecular Inversion Probes) technology
4 GPL16293 Affymetrix Human GeneChip GGH 3_0v1 Array 1,172,413 Affymetrix Inc 2012-11-16 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human GeneChip GGH 3_0v1 Array,
5 GPL8119 Affymetrix GeneChip Human HJAY Array r1 569,464 Affymetrix Inc 2009-01-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human HJAY Array r1,
6 GPL4685 [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array 22,944 Affymetrix Japan 2006-12-20 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array, HT-HG_U133A (early access version) high-throughput array (Affy part number 520276)
7 GPL6660 Nsp copy number (CN) array (ds2) 6,276,448 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds2), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
8 GPL6659 Nsp copy number (CN) array (ds1) 6,121,086 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds1), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
9 GPL3812 Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP) 267,343 Affymetrix, Inc 2006-05-25 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Mapping 500K Early Access Array (250K_Sty_SNP), Early Access Array The GeneChip® Human Mapping 500K Array Set is comprised of two arrays (Nsp/Sty arrays).
10 GPL3811 Affymetrix GeneChip Early Access Mapping 500K Set Array (250K_Nsp_SNP) 267,305 Affymetrix, Inc 2006-05-25 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Early Access Mapping 500K Set Array (250K_Nsp_SNP), Early Access Array The GeneChip® Human Mapping 500K Array Set is comprised of two arrays (Nsp/Sty arrays).
11 GPL5295 AFFY Human Phase3 v1.0 - C62 4,919,563 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C62,
12 GPL5249 AFFY Human Phase3 v1.0 - C16 4,422,670 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C16,
13 GPL5267 AFFY Human Phase3 v1.0 - C34 4,320,474 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C34,
14 GPL5246 AFFY Human Phase3 v1.0 - C13 4,240,896 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C13,
15 GPL5250 AFFY Human Phase3 v1.0 - C17 4,120,959 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C17,
16 GPL5235 AFFY Human Phase3 v1.0 - C02 4,053,015 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C02,
17 GPL5306 AFFY Human Phase3 v1.0 - C73 3,959,283 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C73,
18 GPL5290 AFFY Human Phase3 v1.0 - C57 3,943,778 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C57,
19 GPL5284 AFFY Human Phase3 v1.0 - C51 3,878,895 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C51,
20 GPL5260 AFFY Human Phase3 v1.0 - C27 3,855,826 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C27,
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