Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
RSS
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(323)		   Tiling Array
(706)		   cDNA Array
(1,052)		   Oligo Array
(1,352)		   Bead Array
(121)		   Protein Array
(1)		   Antibody
(21)		   RT-PCR
(89)		   HT-Seq
(51)		   Other
(36)		   All
(3,761)		  
1   |   2   |   3   |   4   |   5      »      [17]
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16043 GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs) 49,495 Whitehead Institute for Biomedical Research 2012-09-11 Affymetrix, Inc. Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs),
2 GPL5356 Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Hs133Av2_Hs_REFSEQ_8] 17,635 Washington University in St. Louis 2007-06-05 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Hs133Av2_Hs_REFSEQ_8], This is identical to GPL571 but a custom CDF environment was used to extract data. The custom CDF (Hs133Av2_Hs_REFSEQ_8) was described by Dai et al., NAR 2005 33(20), PMID: 16284200. The custom CDF has been linked as a supplementary file at the foot of this record.
3 GPL9793 Affymetrix Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A20071112,EP] 337,421 Walter and Eliza Hall Institute of Medical Research 2009-12-11 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Exon 1.0 ST Array [CDF: HuEx-1_0-st-v2,coreR3,A20071112,EP], Probe set data extracted from custom CDF [HuEx-1_0-st-v2,coreR3,A20071112,EP]. #%chip_type=HuEx-1_0-st-v2 #%lib_set_name=HuEx-1_0-st #%lib_set_version=v2 #%genome-species=Homo sapiens #%genome-version-ucsc=hg18 #%genome-version-ncbi=36 #%genome-version-create_date=2006-03 #%netaffx-annotation-date=2008-07-21 #%netaffx-annotation-netaffx-build=26
4 GPL7020 NuGO array (human) NuGO_Hs1a520180 23,941 Wageningen University 2008-07-03 AFFYMETRIX Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, NuGO array (human) NuGO_Hs1a520180, This array has been designed by NuGO and manufactured by Affymetrix. NuGO is a European Union-funded Network of Excellence, the full title of which is 'The European Nutrigenomics Organisation: linking genomics, nutrition and health research'. This array contains aproximately 24.000 probesets, relevant to nutrigenomics studies. More info: http://www.nugo.org http://blog.bigcat.unimaas.nl/~martijn/NuGO/index.html
5 GPL6823 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs_ENTREZG_10] 17,699 Wageningen University 2008-05-06 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs_ENTREZG_10], CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Sept 11, 2006) was used as source. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. For detailed description please see the paper and website.
6 GPL6791 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs_ENTREZG_10] 17,589 Wageningen University 2008-04-28 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs_ENTREZG_10], CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Sept 11, 2006) was used as source. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. For detailed description please see the paper and website.
7 GPL7144 NuGO array (human) NuGO_Hs1a520180 [CDF: Hs_ENTREZG_10] 16,313 Wageningen University 2008-08-06 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, NuGO array (human) NuGO_Hs1a520180 [CDF: Hs_ENTREZG_10], CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Sept 11, 2006) was used as source. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. For detailed description please see the paper and website.
8 GPL2939 VDX_Homo_sapiens_Breast_2 151 Veridex 2005-10-13 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, VDX_Homo_sapiens_Breast_2,
9 GPL14961 Afirma-T Human Custom Array 241 Veracyte Inc. 2011-12-05 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Afirma-T Human Custom Array,
10 GPL6671 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [MBNI v10 Entrez Gene ID CDF] 17,699 Van Andel Research Institute 2008-04-01 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [MBNI v10 Entrez Gene ID CDF], This array is identical to GPL570 but the data were analyzed with custom CDF environments created by the MBNI - The version 10 entrez gene ID CDF was used.
11 GPL10175 Affymetrix Human Genome U133 Plus 2.0 Array [MBNI v12 Entrez Gene ID CDF] 17,726 Van Andel Institute 2010-03-14 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Genome U133 Plus 2.0 Array [MBNI v12 Entrez Gene ID CDF], Custom CDF environment (version 12 Entrez Gene ID CDF) created by The Molecular & Behavioral Neuroscience Institute (MBNI), University of Michigan.
12 GPL9101 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array (MBNI v11 Entrez Gene ID CDF) 17,726 Van Andel Institute 2009-08-26 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array (MBNI v11 Entrez Gene ID CDF),
13 GPL11433 Affymetrix Human Genome U133 Plus 2.0 Array [MBNI v9 Entrez Gene ID CDF] 17,637 Van Andel Institute 2011-01-12 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Genome U133 Plus 2.0 Array [MBNI v9 Entrez Gene ID CDF], This array is identical to GPL570 but the data were analyzed with a custom CDF environment (version 9 Entrez Gene ID CDF) created by The Molecular & Behavioral Neuroscience Institute (MBNI), University of Michigan.
14 GPL4866 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [MBNI v6 Entrez Gene ID CDF] 17,232 Van Andel Institute 2007-02-13 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [MBNI v6 Entrez Gene ID CDF], This array is identical to GPL570 but the data were analyzed with custom CDF environments created by the MBNI - The version 6 entrez gene ID CDF was used.
15 GPL9392 Affymetrix human mitochondrial array [CDF: FATMITO1a520158F] 4,825 University of Washington 2009-10-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix human mitochondrial array [CDF: FATMITO1a520158F], Mitochondrial gene expression microarray. FATMITO1a520158F
16 GPL9113 Affymetrix Human Exon 1.0 ST Array [probeset (exon) custom CDF based on Ensembl v.49] 1,245,038 University of Turku 2009-08-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Exon 1.0 ST Array [probeset (exon) custom CDF based on Ensembl v.49], Chip description file based on Ensembl v.49
17 GPL9102 Affymetrix Human Genome U133 Plus 2.0 Array [individual probe level version] 604,258 University of Turku 2009-08-26 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Genome U133 Plus 2.0 Array [individual probe level version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. The sequences from which these probe sets were derived were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 133, April 20, 2001) and then refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the University of California, Santa Cruz Golden-Path human genome database (April 2001 release). In addition, there are 9,921 new probe sets representing approximately 6,500 new genes. These gene sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from the UniGene database (Build 159, January 25, 2003) and refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the NCBI human genome assembly (Build 31). This platform represents all the individual probes (not probesets) on the Affymetrix Human Genome U133 Plus 2.0 Array. Individual probes are named with the probeset ID (AFFY_ID) plus the number of the probe.
18 GPL9987 Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENSG v12.1.0] 18,394 University of Turku 2010-01-28 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENSG v12.1.0], Custom CDF (Brainarray v12.1.0)
19 GPL7026 Human Promoter Array 1.0R - NCBI build_35 5,150,820 University of Tokyo 2008-07-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Human Promoter Array 1.0R - NCBI build_35, For data analysis of the associated Samples, we calculated MAT scores based on the hyridization intensity data of the probes within 500bp windows. The coordinate column in the Platform data table represents the chromosome coordinates for the 500bp window center positions.
20 GPL17175 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENTREZG v15.1.0] 18,988 University of Padova 2013-05-17 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [CDF: HGU133Plus2_Hs_ENTREZG v15.1.0], This array is identical to GPL570 but the data were analyzed with a custom CDF environment, hgu133plus2hsentrezgcdf_15.1.0.
1   |   2   |   3   |   4   |   5      »      [17]
DBCLS | Site Policies | Contact Us