Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,985)
  Primates
(80)
  Rodents
(1,907)
  Mammals
(359)
  Vertebrates
(450)
  Invertebrates
(1,139)
  Plants
(2,490)
  Bacteria
(1,901)
  Viruses
(90)
  Phages
(11)
  Unclassified
(542)
  All
(13,032)
 
  SAGE NlaIII
(5)
  SAGE RsaI
(0)
  SAGE Sau3A
(1)
  MPSS
(2)
  GeneChip
(367)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(0)
  Bead Array
(138)
  Protein Array
(1)
  Antibody
(24)
  RT-PCR
(128)
  HT-Seq
(0)
  Other
(51)
  All
(3,985)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL1352 [U133_X3P] Affymetrix Human X3P Array 61,359 Affymetrix, Inc. 2004-07-19 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [U133_X3P] Affymetrix Human X3P Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip X3P Array was designed specifically for whole-genome expression profiling of formalin-fixed, paraffin-embedded (FFPE) samples, and is now available via the GeneChip Made-to-Order program. Resulting from a collaboration between Affymetrix and Arcturus, this array is optimized as part of a system solution together with the Paradise Reagent System from Arcturus for expression analysis of FFPE samples. FFPE samples introduce unique challenges for microarray analysis, including potential fragmentation and chemical modification of RNA molecules. In order to overcome these challenges, the Paradise Reagent System was developed to provide RNA isolation and amplification reagents optimized for FFPE samples. In addition, the X3P Array is designed to focus on interrogating sequences located closer to the 3' end of the transcripts compared with standard GeneChip arrays. Together, the reagents and array accommodate the characteristics of the FFPE RNA samples, enabling genome-wide profiling. The target sequences on the X3P Arrays are identical to those used for designing the Human Genome U133 Plus 2.0 Array, for a total of 47,000 transcripts with 61,000 probe sets, although the probes on the two types of arrays are significantly different. As a result of the modification to the probe selection criteria, the majority of the probe sets on the X3P arrays are selected from the 300 bases at the most 3' end of the transcripts. This is different from the standard Affymetrix design strategy which selects probe sets within the region of 600 bases proximal to the 3' ends. To select probes for the 47,000 transcripts, it was not possible to identify high-performance probe sets within the shorter 300 base probe selection region for approximately 4,000 transcripts. For these transcripts, two sets of probes are represented on the arrays: 1) the original probe sets from the standard HG-U133 Plus design are replicated on the X3P arrays, and 2) the new, more 3' probe sets are also included although they fell below the minimum probe score selection threshold. In addition, fewer than 200 transcripts from the HG-U133 Plus design are only represented by the HG-U133 Plus probe sets, where no probe sets within the smaller (300 bps) probe selection region could be found. Annotations derived from Affymetrix CSV file dated 6/23/2004
2 GPL4685 [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array 22,944 Affymetrix Japan 2006-12-20 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array, HT-HG_U133A (early access version) high-throughput array (Affy part number 520276)
3 GPL16267 [skychip1d520579] Affymetrix Human AMLprofiler Array 133 Skyline Diagnostics 2012-11-09 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [skychip1d520579] Affymetrix Human AMLprofiler Array, It is an RNA chip, however, we employ the SNP algorithm DM from the Affymetrix Power tools.
4 GPL15207 [PrimeView] Affymetrix Human Gene Expression Array 49,395 Affymetrix, Inc. 2012-02-08 Affymetrix, Inc. Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [PrimeView] Affymetrix Human Gene Expression Array,
5 GPL10983 [Mitochip_2] Affymetrix Human Mitochondrial Resequencing Array 2.0 0 Affymetrix, Inc. 2010-09-27 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Mitochip_2] Affymetrix Human Mitochondrial Resequencing Array 2.0, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html
6 GPL2005 [Mapping50K_Xba240] Affymetrix Human Mapping 50K Xba240 SNP Array 59,015 Affymetrix, Inc. 2005-04-28 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Mapping50K_Xba240] Affymetrix Human Mapping 50K Xba240 SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mapping 100K Set is the first in a family of products for whole-genome association studies. It is comprised of a set of two arrays that enable genotyping of greater than 100,000 SNPs with a single primer. copy number analysis mean marker distance of 26 kb provides both copy number and allele specific information
7 GPL2004 [Mapping50K_Hind240] Affymetrix Human Mapping 50K Hind240 SNP Array 57,299 Affymetrix, Inc. 2005-04-28 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Mapping50K_Hind240] Affymetrix Human Mapping 50K Hind240 SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mapping 100K Set is the first in a family of products for whole-genome association studies. It is comprised of a set of two arrays that enable genotyping of greater than 100,000 SNPs with a single primer. copy number analysis mean marker distance of 26 kb provides both copy number and allele specific information
8 GPL3720 [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array 238,378 Affymetrix, Inc. 2006-05-02 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays).
9 GPL3718 [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array 262,338 Affymetrix, Inc. 2006-05-02 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays).
10 GPL2641 [Mapping10K_Xba142] Affymetrix Human Mapping 10K 2.0 Array 10,208 Affymetrix, Inc. 2005-07-18 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Mapping10K_Xba142] Affymetrix Human Mapping 10K 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html As with the previous-generation GeneChip® Mapping 10K Array, the GeneChip Mapping 10K 2.0 Array enables researchers to genotype more than 10,000 SNPs in a single experiment with one primer. The GeneChip Mapping 10K 2.0 Array contains equivalent content and performance as the original GeneChip Mapping 10K Array, but advances in photolithographic technology enable it to be produced in a smaller, more cost-efficient format. Now, researchers can genotype 10,000 SNPs in a single experiment at a cost comparable to microsatellite research. Annotations derived from Affymetrix CSV file dated 6/21/2005.
11 GPL1266 [Mapping10K_Xba131] Affymetrix Human Mapping 10K SNP Array 11,564 Affymetrix, Inc. 2004-05-28 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [Mapping10K_Xba131] Affymetrix Human Mapping 10K SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 10K Array enables genotyping of greater than 10,000 Single Nucleotide Polymorphism (SNP) loci on a single array. The SNPs on this array were chosen from The SNP Consortium (TSC) database based on their presence on 250- to 1,000-basepair Xba I fragments in the human genome. SNPs were chosen based upon high reproducibility, call rate, accuracy, and physical map position. These SNPs have been validated across a minimum of 200 individuals from at least three distinct populations, Caucasian, Asian, and African-American. The average heterozygosity of the markers is greater than .35 across these populations. Annotations taken from CSV (2.8 MB, 3/11/05).
12 GPL13330 [INDEL01m520678F] Affymetrix human INDEL genotyping array 0 Institute for Genome Sciences 2011-03-25 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [INDEL01m520678F] Affymetrix human INDEL genotyping array, Custom array.
13 GPL11209 [HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 12] 22,197 NCBI/NLM/NIH 2010-11-15 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 12],
14 GPL13243 [HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 11.0.1] 19,793 NCBI/NLM/NIH 2011-03-01 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 11.0.1], Probe set data extracted from custom CDF [Brainarray Version 11.0.1, HuGene10stv1_Hs_ENTREZG]
15 GPL17692 [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [transcript (gene) version] 53,617 Affymetrix, Inc. 2013-09-06 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_1-st] Affymetrix Human Gene 2.1 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html September 06, 2013: HuGene-2_1-st-v1.na33.2.hg19.transcript.csv
16 GPL16686 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version] 53,981 Affymetrix, Inc. 2013-02-14 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv
17 GPL18476 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [hugene20st_Hs_ENSG] 32,633 NCBI/NLM/NIH 2014-03-27 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [hugene20st_Hs_ENSG], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv
18 GPL17930 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_17.0.0] 23,786 NCBI/NLM/NIH 2013-11-14 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_17.0.0], Brainarray: HuGene20stv1_Hs_ENTREZG_17.0.0
19 GPL17889 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_16.0.0] 24,092 NCBI/NLM/NIH 2013-11-05 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [HuGene20stv1_Hs_ENTREZG_16.0.0], Brainarray: HuGene20stv1_Hs_ENTREZG_16.0.0
20 GPL11532 [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [transcript (gene) version] 33,297 Affymetrix, Inc. 2011-01-18 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [transcript (gene) version], HuGene-1_1-st-v1.na32.hg19.transcript.csv #%create_date=Tue Jun 21 17:41:46 2011 PDT #%chip_type=HuGene-1_1-st-v1 #%lib_set_name=HuGene-1_1-st #%lib_set_version=v1 #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%genome-lifted-method=liftOver #%genome-lifted_from-species=Homo sapiens #%genome-lifted_from-version-ucsc=hg18 #%genome-lifted_from-version-ncbi=36.1 #%netaffx-annotation-date=2011-06-22 #%netaffx-annotation-netaffx-build=32
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