Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)		   Primates
(199)		   Rodents
(12,016)		   Mammals
(754)		   Vertebrates
(1,115)		   Invertebrates
(3,796)		   Plants
(6,479)		   Bacteria
(2,920)		   Viruses
(51)		   Phages
(4)		   Unclassified
(249)		   All
(45,516)		  
  SAGE NlaIII
(77)		   SAGE RsaI
(0)		   SAGE Sau3A
(5)		   MPSS
(2)		   GeneChip
(7,084)		   Tiling Array
(1,340)		   cDNA Array
(1,898)		   Oligo Array
(4,140)		   Bead Array
(1,936)		   Protein Array
(0)		   Antibody
(34)		   RT-PCR
(126)		   HT-Seq
(1,163)		   Other
(79)		   All
(17,885)		  
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Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Whole genome DNAse hypersensitivity in human CD4+ T-cells (GSE8486) [HT Sequencing] NCI Human Solexa Platform 14814K (GPL6314) National Cancer Institute 2007-07-16 Homo sapiens
Homo sapiens		 14,814,587
(14,814,587 x 1) 		1 by_platform
by_series
2 Whole genome DNAse hypersensitivity in human CD4+ T-cells (GSE8486) [HT Sequencing] NCI Human 454 Platform 2795K (GPL6300) National Cancer Institute 2007-07-16 Homo sapiens
Homo sapiens		 2,795,975
(2,795,975 x 1) 		1 by_platform
by_series
3 mRNA Sequencing Reveals Altered Synaptic Vesicular Transport in Post-Mortem Cerebellum (GSE12297) [HT Sequencing] NCGR Human RefSeq 7 08 (GPL7110) National Center for Genome Resources 2008-07-30 Homo sapiens
Homo sapiens		 571,080
(28,554 x 20) 		20 by_platform
by_series
4 Divergent transcription from active promoters (GSE13483) [HT Sequencing] Salk-Yeo-Solexa-ES,NP,NE cells (GPL7564) University of California, San Diego 2008-11-05 Homo sapiens
Homo sapiens		 78,729
(26,243 x 3) 		1 2 by_platform
by_series
5 Comparison of glioblastoma tissue, glioblastoma primary culture, and normal brain (GSE14878) [HT Sequencing] SNI_human_MPSS (GPL8198) Swedish Medical Center 2009-02-17 Homo sapiens
Homo sapiens		 59,906
(29,953 x 2) 		2 by_platform
by_series
6 Characterization of microRNA Expression Profiles in human primary differentiated T lymphocytes (GSE16453) [HT Sequencing] LC Sciences Human 454 miRHuman_8.2 [condensed version] (GPL8664) "Sapienza" University of Rome 2009-06-05 Homo sapiens
Homo sapiens		 2,012
(503 x 4) 		4 by_platform
by_series
7 ENCODE Transcription Factor Binding Sites by ChIP-seq from Stanford/Yale/USC/Harvard (GSE31477) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) UCSC ENCODE DCC 2011-08-18 Homo sapiens
Homo sapiens		 414
(0 x 414) 		12 120 3 4 1 43 19 7 5 60 140 by_platform
by_series
8 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB (GSE32465) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) UCSC ENCODE DCC 2011-09-28 Homo sapiens
Homo sapiens		 399
(0 x 399) 		33 55 21 46 49 41 5 149 by_platform
by_series
9 University of Washington Human Reference Epigenome Mapping Project (GSE18927) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) University of Washington 2009-11-06 Homo sapiens
Homo sapiens		 342
(0 x 342) 		13 54 27 14 83 46 15 46 11 7 19 7 by_platform
by_series
10 BI Human Reference Epigenome Mapping Project (GSE17312) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) Broad Institute 2009-07-24 Homo sapiens
Homo sapiens		 300
(0 x 300) 		67 107 6 14 21 2 4 7 30 41 1 by_platform
by_series
11 UCSD Human Reference Epigenome Mapping Project (GSE16256) [HT Sequencing] Illumina HiSeq 2000 (Homo sapiens) (GPL11154) University of California, San Diego 2009-05-27 Homo sapiens
Homo sapiens		 269
(0 x 269) 		38 37 6 43 24 18 10 1 10 78 4 by_platform
by_series
12 MicroRNA sequence and expression analysis in breast tumors by deep sequencing (GSE28884) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) Rockefeller University 2011-04-27 Homo sapiens
Homo sapiens		 245
(0 x 245) 		245 by_platform
by_series
13 MicroRNA sequence and expression analysis in breast tumors by deep sequencing [miRNA sequence data] (GSE29173) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) Rockefeller University 2011-05-10 Homo sapiens
Homo sapiens		 245
(0 x 245) 		245 by_platform
by_series
14 Neighboring genomic regions influence differential methylation patterns of CpG islands in endometrial and breast cancers (GSE26592) [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) The Ohio State University 2011-01-12 Homo sapiens
Homo sapiens		 243
(0 x 243) 		115 128 by_platform
by_series
15 BI Human Reference Epigenome Mapping Project: ChIP-Seq in human subject (GSE19465) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) Broad Institute 2009-12-14 Homo sapiens
Homo sapiens		 216
(0 x 216) 		4 63 11 30 27 14 7 10 7 11 32 by_platform
by_series
16 DNA Methylation by Reduced Representation Bisulfite Seq from ENCODE/HudsonAlpha (GSE27584) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) UCSC ENCODE DCC 2011-03-01 Homo sapiens
Homo sapiens		 190
(0 x 190) 		8 10 4 16 6 4 6 4 6 20 2 104 by_platform
by_series
17 UCSF-UBC Human Reference Epigenome Mapping Project (GSE16368) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) UCSF-UBC 2009-06-01 Homo sapiens
Homo sapiens		 180
(0 x 180) 		18 52 15 59 2 13 21 by_platform
by_series
18 Mapping and analysis of chromatin state dynamics in nine human cell types (ChIP-Seq) (GSE26320) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) Massachusetts Institute of Technology 2010-12-27 Homo sapiens
Homo sapiens		 180
(0 x 180) 		42 19 20 99 by_platform
by_series
19 Systematic determination and analysis of chromatin state dynamics in nine human cell types (GSE26386) [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) Massachusetts Institute of Technology 2011-01-02 Homo sapiens
Homo sapiens		 180
(0 x 180) 		42 19 20 99 by_platform
by_series
20 University of Washington Human Reference Epigenome Mapping Project (GSE18927) [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) University of Washington 2009-11-06 Homo sapiens
Homo sapiens		 176
(0 x 176) 		4 32 17 3 27 34 24 25 3 1 1 5 by_platform
by_series
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