Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page

An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Human (3,705)   Primates (37)   Rodents (1,748)   Mammals (295)   Vertebrates (402)   Invertebrates (1,004)   Plants (2,170)   Bacteria (1,636)   Viruses (78)   Phages (8)   Unclassified (399)   All (11,528)

SAGE NlaIII (5)   SAGE RsaI (0)   SAGE Sau3A (1)   MPSS (2)   GeneChip (310)   Tiling Array (0)   cDNA Array (0)   Oligo Array (0)   Bead Array (119)   Protein Array (1)   Antibody (20)   RT-PCR (82)   HT-Seq (0)   Other (36)   All (3,705)   Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification Keywords used for the classification are shown with bold font. 1 GPL1443 Massively Parallel Signature Sequencing - MPSS (classic method) 391,669 Lynx Therapeutics, Inc. 2004-09-10 Homo sapiens MPSS MPSS, Massively Parallel Signature Sequencing - MPSS (classic method), Sequencing from the 3' most DpnII site from mRNA using Lynx's MPSS technology. MPSS allows a comprehensive survey of all expressed transcripts in a cell or tissue, without apriori knowledge. This dataset was annotated using a combination of LocusLink, Unigene (build 171) and the latest human build as provided from UCSC (hg16). Annotation Classe Table: Virtual Signature Class mRNA Orientation Poly-Adenylation Features Position 0 Either - Repeat Warning Not applicable Not applicable 1 Forward Strand Poly-A Signal, Poly-A Tail 3' most 2 Forward Strand Poly-A Signal 3' most 3 Forward Strand Poly-A Tail 3' most 4 Forward Strand None 3' most 5 Forward Strand None Not 3' most 6 Forward Strand Internal Poly-A Not 3' most 11 Reverse Strand Poly-A Signal, Poly-A Tail 5' most 12 Reverse Strand Poly-A Signal 5' most 13 Reverse Strand Poly-A Tail 5' most 14 Reverse Strand None 5' most 15 Reverse Strand None Not 5' most 16 Reverse Strand Internal Poly-A Not 5' most 22 Unknown Poly-A Signal Last before signal 23 Unknown Poly-A Tail Last before tail 24 Unknown None Last in sequence 25 Unknown None Not last 26 Unknown Internal Poly-A Not 3' most 1000 Unknown- Derived from Genomic Sequence Not applicable Not applicable Keywords = MPSS, mRNA sequencing, tags 2 GPL5678 MPSS tags from techical comparison of SAGE and MPSS 30,099 University of Oxford 2007-07-27 Homo sapiens MPSS MPSS, MPSS tags from techical comparison of SAGE and MPSS, A list of all tags obtained in a set of MPSS libraries used to analyse the transcriptome of a CD4+ T cell clone.