Gene Expression Omnibus (GEO) Overview

RSS

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(3,705)

Primates
(37)

Rodents
(1,748)

Mammals
(295)

Vertebrates
(402)

Invertebrates
(1,004)

SAGE RsaI
(0)

Oligo Array
(1,326)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL9944	NimbleGen Human 2.1M array [HG18_CGH_LISOv1_HX1]	2,179,164	University of Georgia	2010-01-19	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human 2.1M array [HG18_CGH_LISOv1_HX1], Annotation in this record based on NCBI human build 36.
2	GPL9684	Eichler-NimbleGen Human 2.1 HD2 CGH chip	2,175,072	University of Washington	2009-11-16	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, Eichler-NimbleGen Human 2.1 HD2 CGH chip,
3	GPL10483	Human Meth 2.1M WG-T 8-10 [0701_HG18_TILE_08_HX1]	2,173,668	Mount Sinai School of Medicine	2010-06-04	NimbleGen	Homo sapiens	Oligo Array	spotted oligonucleotide, Human Meth 2.1M WG-T 8-10 [0701_HG18_TILE_08_HX1],
4	GPL11008	NimbleGen-Homo_sapiens-2.1M-hg18	2,173,668	Sage Bionetworks	2010-10-01	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen-Homo_sapiens-2.1M-hg18, design ID: 5173 design description: 0701_HG18_TILE_27 native array description file: 0701_HG18_TILE_09_HX1.ndf native array description file: 0701_HG18_TILE_09_HX1.pos
5	GPL10671	080814_HG18_Deluxe_Promoter_HX1	2,173,622	SRA International, Inc	2010-07-12	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, 080814_HG18_Deluxe_Promoter_HX1, Platform annotations are based on build HG18, NCBI 36 native array description file: 080814_HG18_Deluxe_Promoter_HX1.ndf native array description file: 080814_HG18_Deluxe_Promoter_HX1.pos
6	GPL10573	Human Meth 2.1M WG-T 10-10 [0701_HG18_TILE_10_HX1]	2,173,583	Mount Sinai School of Medicine	2010-06-22	NimbleGen	Homo sapiens	Oligo Array	spotted oligonucleotide, Human Meth 2.1M WG-T 10-10 [0701_HG18_TILE_10_HX1],
7	GPL9275	NimbleGen Human 2.1M array	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human 2.1M array, Annotation based on UCSC human genome assembly March 2006 (HG18)
8	GPL10815	NimbleGen Human 2.1M array [080131_HG18_WG_CGH_v2DCR_HX1]	2,161,679	Cold Spring Harbor Lab	2010-08-17	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human 2.1M array [080131_HG18_WG_CGH_v2DCR_HX1], Annotation in this record based on NCBI human build 36. designname: 080131_HG18_WG_CGH_v2DCR_HX1 designid: 7058
9	GPL9824	HG18_Aug09_HD2.3_Custom_Promoter (NimbleGen)	2,160,368	UT Southwestern Medical Center	2009-12-23	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, HG18_Aug09_HD2.3_Custom_Promoter (NimbleGen), HG18 The array tiles 23550 RefSeq genes from -3000 to +7000 relative to the TSS, with a mean probe spacing of 75bp
10	GPL10559	NimbleGen HD2 Human whole genome custom array 2.1M [090310_LP_til_HX1]	2,151,683	Netherlands Cancer Institute	2010-06-17	Nimblegen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen HD2 Human whole genome custom array 2.1M [090310_LP_til_HX1], Custom made nimblegen array NimbleGen file 090310_LP_til_HX1.ndf linked below as supplementary file. Platform table annotations based on NCBI36 build.
11	GPL13611	NimbleGen Human 2.0M array [091020_HG19_CHARM_HX1]	2,151,397	Johns Hopkins University School of Medicine	2011-05-18	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human 2.0M array [091020_HG19_CHARM_HX1], Annotation based on UCSC human genome assembly Feb 2009 (hg19) designname=091020_HG19_CHARM_HX1 designid=10816
12	GPL13134	NimbleGen Human 2.1M array [100428_HG19_CHARM_HX1]	2,151,393	Johns Hopkins University School of Medicine	2011-02-08	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human 2.1M array [100428_HG19_CHARM_HX1], Custom design. Annotation based on UCSC human genome assembly Feb 2009 (HG19)
13	GPL13301	NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100205_HG18_Promoter_MeDIP_HX1]	2,137,191	NIH/NEI/NCCAM	2011-03-18	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100205_HG18_Promoter_MeDIP_HX1], Design ID: 11333 Design name: 100205_HG18_Promoter_MeDIP_3 Genome build: HG18, NCBI36 HX1 - HG18 promoter design, mean probe spacing 99, median 100. This design consists of: 1) Promoter regions, from 7250 bases upstream of each TSS to 3250 bases downstream; 2) miRNA genes, starting from 15kbp upstream of the mature gene product to its 3' end; 3) CpG islands; 4) ENCODE regions. Probes were chosen from the hg18_tiling database. Most probes were chosen at an int65win35max1. Any region that resulted in no coverage from this selection was re-selected at int10win90max10. Native array description file: 100205_HG18_Promoter_MeDIP_HX1.ndf Native array description file: 100205_HG18_Promoter_MeDIP_HX1.pos
14	GPL15114	NimbleGen Homo sapiens 2.1M hg18	2,125,410	NCBI/NLM/NIH	2012-01-11	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Homo sapiens 2.1M hg18,
15	GPL15552	NimbleGen Human ChIP-chip 2.1M Deluxe Promoter Array [100718_HG18_Deluxe_Promoter_HX1]	2,125,410	NimbleGen Systems, Inc.	2012-05-10	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human ChIP-chip 2.1M Deluxe Promoter Array [100718_HG18_Deluxe_Promoter_HX1], Design ID: 535383 Design name: 100718_HG18_Deluxe_Promoter_HX1 Genome build: HG18
16	GPL7884	ExonHit Human Genome Wide SpliceArray 1.0	2,108,940	ExonHit Therapeutics	2008-12-22	ExonHit	Homo sapiens	Oligo Array	in situ oligonucleotide, ExonHit Human Genome Wide SpliceArray 1.0, The Human Genome Wide Splice Array 1.0 contains over six million oligonucleotides designed to monitor expression of 20,649 genes and interrogate evidenced and predicted alternative splicing events. Alternative splicing events were identified by comparing the exon structure of a selected representative sequence from a gene to the putative exon structure of overlapping and related public sequences (including RefSeq, mRNA and EST databases from GenBank). Probes were designed to monitor the alternative isoforms indicated.
17	GPL16284	NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1]	2,081,759	NimbleGen Systems, Inc.	2012-11-14	NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, NimbleGen Human DNA Methylation 2.1M Deluxe Promoter Array [100929_HG19_Deluxe_Prom_Meth_HX1], Build: HG19, NCBI 37
18	GPL9057	Nimblegen/AECOM Human HG18_HELP array	1,135,547	Albert Einstein College of Medicine	2009-08-19	Roche NimbleGen	Homo sapiens	Oligo Array	in situ oligonucleotide, Nimblegen/AECOM Human HG18_HELP array, Array based on the human genome (hg18), Mar 2006 release. Custom DNA methylation microarray for the HELP assay, designed to cover 1,135,549 HpaII/MspI fragments of 50-2,000 bp in unique sequence throughout the human genome. Native NimbleGen files (ndf, ngd, pos) are linked below as supplementary files.
19	GPL10153	Agilent-023642 SurePrint G3 Human High-Resolution Discovery Microarray 1x1M (Feature Number version)	974,016	Agilent Technologies	2010-03-09	Agilent Technologies	Homo sapiens	Oligo Array	in situ oligonucleotide, Agilent-023642 SurePrint G3 Human High-Resolution Discovery Microarray 1x1M (Feature Number version), SurePrint G3 Human High-Resolution Discovery Microarray, 1x1M Arrays of this design have barcodes that begin with 16023642 or 2523642. Data table annotations based on build hg18:NCBI36:Mar2006. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
20	GPL10808	Agilent-022689 Custom BCM-Beaudet Human 1M Exon Autism Array	974,016	Baylor College of Medicine	2010-08-13	Agilent Technologies	Homo sapiens	Oligo Array	in situ oligonucleotide, Agilent-022689 Custom BCM-Beaudet Human 1M Exon Autism Array, Custom Agilent 1M CGH array that was designed to cover exons of 97% of all RefSeq genes in the genome, based on hg18 build. Arrays of this design have barcodes that begin with 16022689 or 2522689. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

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