Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(106)		   Primates
(0)		   Rodents
(47)		   Mammals
(28)		   Vertebrates
(11)		   Invertebrates
(19)		   Plants
(73)		   Bacteria
(31)		   Viruses
(0)		   Phages
(0)		   Unclassified
(5)		   All
(322)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(2)		   Tiling Array
(3)		   cDNA Array
(58)		   Oligo Array
(42)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(1)		   HT-Seq
(0)		   Other
(0)		   All
(106)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL7304 Institut Cochin HG18 60mer expression array 47K 47,633 Institut Cochin 2008-09-12 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Institut Cochin HG18 60mer expression array 47K,
2 GPL7038 INSERM-Agilent-014850 Whole Human Genome Microarray 4x44K (G4112F) 45,220 INSERM UMRS U872 (Eq 7) Nutriomique 2008-07-10 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, INSERM-Agilent-014850 Whole Human Genome Microarray 4x44K (G4112F), This multi-pack (4X44K) formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. Arrays of this design have barcodes that begin with 16014850 or 2514850. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. Alternative version of GPL4133
3 GPL8755 PF - Agilent-014850 Whole Human Genome Microarray 4x44K 45,015 Laboratoires Pierre Fabre 2009-06-23 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, PF - Agilent-014850 Whole Human Genome Microarray 4x44K, This multi-pack (4X44K) formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. Arrays of this design have barcodes that begin with 16014850 or 2514850. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
4 GPL7034 INSERM-Agilent-012391 Whole Human Genome Oligo Microarray G4112A 44,290 INSERM UMRS U872 (Eq 7) Nutriomique 2008-07-09 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, INSERM-Agilent-012391 Whole Human Genome Oligo Microarray G4112A, This single 44K formatted microarray represents a compiled view of the human genome as it is understood today. The sequence information used to design this product was derived from a broad survey of well known sources such as RefSeq, Goldenpath, Ensembl, Unigene and others. The resulting view of the human genome covers 41K unique genes and transcripts which have been verified and optimized by alignment to the human genome assembly and by Agilent's Empirical Validation process. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. Alternative version of GPL1708
5 GPL11633 UZ Gent human genome-wide array UG_1 43,356 Institut Curie 2011-01-20 Agilent Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, UZ Gent human genome-wide array UG_1, Platform annotation is based on human genome build UCSC hg18. Center for Medical Genetics, Ghent University Hospital, Ghent, Belgium
6 GPL9796 IRCL Human Genome CGH Microarray 4x44K (G4426B) (probe version) 42,494 Université Lille II 2009-12-14 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, IRCL Human Genome CGH Microarray 4x44K (G4426B) (probe version), Transfer of the Human Genome CGH Microarray 44B to the 4x44K format Arrays of this design have barcodes that begin with 16014950 or 2514950.
7 GPL9798 IRCL Human Genome CGH Microarray 44B G4410B (probe version) 42,494 Université Lille II 2009-12-14 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, IRCL Human Genome CGH Microarray 44B G4410B (probe version), Human Genome CGH Microarray 44B, high-resolution, high performance 60-mer oligonucleotide, allowing genome-wide survey and molecular profiling of DNA copy number changes on a single chip. It provides comprehensive genome-wide coverage with emphasis on the most commonly studied genomic regions and cancer-related genes. It consists of ~43,000 60-mer oligonucleotide probes, empirically validated in multiple model systems, spanning coding and noncoding sequences with average spatial resolution of 35kb. It replaces 44A (G4410A), includes all biological probes from 44A, mapped to the latest NCBI build, 35), plus an additional ~ 2,500 probes to expand coverage in the human genome. Agilent has taken extra measures to design the microarray that truly represents the coverage and performance needed for this application. Agilent has developed and optimized assay protocols that enable researchers to use nanogram levels of total genomic DNA without genome complexity reduction. Arrays of this design have barcodes that begin with 16013282 or 2513282.
8 GPL10523 MGX_Human_35K_AROSV4.0.2 37,584 MGX - Montpellier GenomiX 2010-06-10 Operon Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, MGX_Human_35K_AROSV4.0.2, Coating : epoxysylane
9 GPL9299 Operon Homo Sapien V4 36K 36,480 INSERM U418 2009-09-26 Operon Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Operon Homo Sapien V4 36K,
10 GPL1417 Barbry oligo 25000 nat 27,648 CNRS 2004-08-25 Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Barbry oligo 25000 nat, pangenomic oligonucleotide array
11 GPL1456 RNG-MRC_HU25k_NICE 27,648 IPMC/CNRS 2004-09-17 Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, RNG-MRC_HU25k_NICE, RNG-MRC_HU25k_NICE
12 GPL15017 25K human oligonucleotide array v2 26,880 IGBMC 2011-12-15 IGBMC microarray platform Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, 25K human oligonucleotide array v2,
13 GPL8376 25K human oligonucleotide array 26,880 IGBMC 2009-04-01 IGBMC microarray platform Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, 25K human oligonucleotide array,
14 GPL4803 CEA - DSV/DRR/SGF : Human 25k oligo v1.0 26,496 CEA 2007-02-01 CEA - DSV/DRR/SGF Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, CEA - DSV/DRR/SGF : Human 25k oligo v1.0,
15 GPL8863 CEA - DSV/IRCM/LEFG : Human 25k oligo v1.0 25,527 CEA 2009-07-15 CEA - DSV/IRCM/LEFG Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, CEA - DSV/IRCM/LEFG : Human 25k oligo v1.0,
16 GPL6398 INSERM MWG human 23k oligo array_version 3 23,184 IFR26-OGP 2008-01-21 OUEST Genopole (Nantes) Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, INSERM MWG human 23k oligo array_version 3,
17 GPL5049 MLRG Human 21K V12.0 22,656 MGX - Montpellier GenomiX 2007-03-28 Montpellier Génopole Microarray core facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, MLRG Human 21K V12.0, The Human Genome Oligo Set Version 2.0 contains 21,329 70mers representing 21,329 genes obtained from the UniGene Database Build Hs 147 and the Human RefSeq Database, both developed and maintained at the National Center of Biotechnology Information (www.ncbi.nlm.nih.gov/UniGene). The set also includes 12 unique positive and 12 unique negative controls provided in 16 replicates in a 384-well plate.
18 GPL8798 Human oligo array from MWG cancerochips_v2009 22,176 INSERM U915 2009-07-03 OUEST Genopole (Nantes) Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Human oligo array from MWG cancerochips_v2009,
19 GPL7674 Human oligo array from Ocimum (20k) 20,160 INSERM U915 2008-11-19 Plateforme Transcriptome - OUEST Genopole (Nantes) Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Human oligo array from Ocimum (20k),
20 GPL1309 microarray core facility of Nantes - West genopole 19,200 INSERM 2004-06-24 Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, microarray core facility of Nantes - West genopole, The array is constituted of 4217 oligos or pcr-products, representing 3525 genes, spotted in quadruplicate. These genes are striated muscle specific (skeletal and cardiac), identified thanks to nine different theme. This multi-dedicated chip is called the “Myochips”. Keywords = Myochip
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