Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(310)		   Tiling Array
(702)		   cDNA Array
(1,050)		   Oligo Array
(1,326)		   Bead Array
(119)		   Protein Array
(1)		   Antibody
(20)		   RT-PCR
(82)		   HT-Seq
(50)		   Other
(36)		   All
(3,705)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9301 Zhejiang university human 449 oligonucleotide array 1,347 Zhejiang University 2009-09-28 Bioinformatics and Gene Network Research Group, Zhejiang university Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Zhejiang university human 449 oligonucleotide array, Preparation of microarray: 449 immune related genes were included. Specific 70mer oligonucleotides of each gene was searched in the human_V4.0.1_genelist_s+ (Qiagen-Operon).Another 10 housekeeping genes were also included. Oligos (1OD) were dissolved in 100 ul ddH2O and printed on Immobilon-Ny+ Transfer T Membranes (Millipore, Bedford, MA, USA) using GeneTAC M G3 arrayer (Genomic Solutions, Ann Arbor, MI, USA). Each oligo was duplicated triple in each array to verify the reproducibility of experiments. Preparation of labeled cDNA probe: The RNA samples were labeled with 33P-dCTP during the first-strand reverse transcription reactions. The labeling reaction contained 20mmol/L each of dATP, dTTP and dGTP, 10mmol/L dCTP and 3ul of alpha-33P-dCTP (10mCi/ml, Amersham Biosciences, Buckinghamshire, UK), 10ul of First-Strand Buffer, 0.5mmol/L DTT and 400 unit SuperScriptTM II RNase H- Reverse Transcriptase (Invitrogen, Carlsbad, CA, USA), 0.3 ug oligo(dT)16 primer, 0.1 ug random hexamer primer and total RNA at the optimal concentration in a reaction volume of 50 ul. The reaction proceeded at 42C for 2 hours and products were purified using a G-50 column (Amersham Pharmacia Biotech, Piscataway, NJ, USA).
2 GPL3448 YALE/NIMBLEGEN_HUMAN-CHR22_372K_v1.0 372,352 Yale University 2006-02-13 NimbleGen Systems, Inc. Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, YALE/NIMBLEGEN_HUMAN-CHR22_372K_v1.0,
3 GPL3449 YALE/NIMBLEGEN HUMAN-CHR11-beta-globin-locus 6K v1.0 5,614 Yale University 2006-02-13 NimbleGen Systems, Inc. Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, YALE/NIMBLEGEN HUMAN-CHR11-beta-globin-locus 6K v1.0,
4 GPL3450 YALE/NIMBLEGEN HUMAN-CHR11-beta-globin-locus 3K v1.0 3,027 Yale University 2006-02-13 NimbleGen Systems, Inc. Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, YALE/NIMBLEGEN HUMAN-CHR11-beta-globin-locus 3K v1.0,
5 GPL7468 Yale University Nimblegen 2005-05-12_Human_ENCODE_PM_MM 387,282 Yale University 2008-10-10 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Yale University Nimblegen 2005-05-12_Human_ENCODE_PM_MM,
6 GPL4259 XC3 (TCR beta-based oligonucleotide microarray) 63 St. Jude Children's Research Hospital 2006-09-01 St. Jude Children's Research Hospital, Functional Genomics lab Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, XC3 (TCR beta-based oligonucleotide microarray), The Platform data table reflects a condensed representation of the multiply-printed oligos. The full array layout (GPL4259_complete_layout.txt) is linked as a supplementary file at the foot of this record.
7 GPL7168 WIS_Exiqon_miRCURYâ„¢ LNA Array (v.8.1) 447 Weizmann Institute of Science 2008-08-14 Exiqon Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, WIS_Exiqon_miRCURYâ„¢ LNA Array (v.8.1), LNA miRNA microarray
8 GPL13402 Wistar/Shiekhattar-human-44k-1.0 45,220 The Wistar Institute 2011-04-12 Agilent Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Wistar/Shiekhattar-human-44k-1.0,
9 GPL7528 WiCell HG18 WG CGH 391K v1 390,782 WiCell 2008-10-24 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, WiCell HG18 WG CGH 391K v1,
10 GPL7717 WiCell HG18 WG CGH 385K v2 390,782 WiCell 2008-12-01 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, WiCell HG18 WG CGH 385K v2,
11 GPL11619 WiCell HG18 WG CGH 12x135K v3.1 HX12 138,758 WiCell 2011-01-19 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, WiCell HG18 WG CGH 12x135K v3.1 HX12,
12 GPL7737 WiCell 2006-07-27 HG18 WG CGH 390,934 WiCell 2008-12-04 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, WiCell 2006-07-27 HG18 WG CGH,
13 GPL4925 Whole Human Oligo Microarray_let-7b transfection of WERI 41,675 Best Institute 2007-03-04 Agilent Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Whole Human Oligo Microarray_let-7b transfection of WERI,
14 GPL5981 Whole Human Genome Oligo Microarray G4112A 28,495 Dartmouth Medical School 2007-10-10 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Whole Human Genome Oligo Microarray G4112A, See Accession GPL1708 for official Agilent Whole Human Genome Oligo Microarray G4112A
15 GPL8152 Whole Human Genome Oligo Microarray (GenePix version) 44,290 University of North Carolina at Chapel Hill 2009-02-03 Agilent Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Whole Human Genome Oligo Microarray (GenePix version),
16 GPL6824 Whitehead Institute Human Operon/Qiagen v3.1 oligonucleotide array 35,713 Whitehead Institute 2008-05-06 Whitehead Institute's Center of Microarray Technology Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Whitehead Institute Human Operon/Qiagen v3.1 oligonucleotide array,
17 GPL8368 VUMC MACF Human 30k oligo v62 30,000 Vrije Universiteit Medical Center 2009-03-31 VUMC Microarray Core Facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, VUMC MACF Human 30k oligo v62, hydrophilic polymer containing N-hydroxysuccinimide (NHS) ester reactive groups
18 GPL5164 VUMC MACF human 30K oligo v60 29,999 Vrije Universiteit Medical Center 2007-05-16 VUMC Microarray Core Facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, VUMC MACF human 30K oligo v60, hydrophilic polymer containing N-hydroxysuccinimide (NHS) ester reactive groups
19 GPL2827 VUMC MACF human 30K oligo v44 30,000 Vrije Universiteit Medical Center 2005-09-09 VUMC Microarray Core Facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, VUMC MACF human 30K oligo v44, - oligonucleotide sequences are available via www.ensembl.org after agreeing to Compugen's conditions - oligonucleotides were mapped by Ensembl to the NCBI35 version of the human genome - from a total of 76 384-well plates in the library plates 14 and 15 were printed twice (in duplicate) - all other plates were printed once (no replicate spots)
20 GPL2819 VUMC MACF human 30K oligo v42 30,000 Vrije Universiteit Medical Center 2005-09-08 VUMC Microarray Core Facility Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, VUMC MACF human 30K oligo v42, - oligonucleotide sequences are available via www.ensembl.org after agreeing to Compugen's conditions - oligonucleotides were mapped by Ensembl to the NCBI35 version of the human genome - from a total of 76 384-well plates in the library plates 12 and 13 were printed twice (in duplicate) - all other plates were printed once (no replicate spots)
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