Gene Expression Omnibus (GEO) Overview

RSS

DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(502,421)

Primates
(4,928)

Rodents
(181,106)

Mammals
(16,260)

Vertebrates
(18,263)

Invertebrates
(37,338)

SAGE RsaI
(0)

Oligo Array
(103,669)

Protein Array
(0)

endo/exo-crine
(10,736)

embryo
(378)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(8,084)

unclassified
(27,418)

all
(103,669)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM471434	KB1 vs ABC8 (NA18507) on HD2	2,175,072	University of Washington	2009-11-16	[Oligo Array] Eichler-NimbleGen Human 2.1 HD2 CGH chip (GPL9684)	genomic	Homo sapiens	unclassified	source_name:KB1 NA18507 title:KB1 vs ABC8 (NA18507) on HD2 description:The results of this array-CGH experiment were used to conform predicted copy number differences between samples KB1 and NA18507. This was a genome-wide array.
2	GSM498161	Human-tumor	2,175,072	University of Georgia	2010-01-19	[Oligo Array] NimbleGen Human 2.1M array [HG18_CGH_LISOv1_HX1] (GPL9944)	genomic	Homo sapiens	colon	DNA from colon tumor tissue of human 2551 DNA from colon normal tissue of human 2551
3	GSM602947	K562_H3K9me3	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	H3K9me3 ChIP DNA from K562 Total input DNA from K562
4	GSM602948	K562_G9a	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	G9a ChIP DNA from K562 Total input DNA from K562
5	GSM602949	K562_SetDB1	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	SetDB1 ChIP DNA from K562 Total input DNA from K562
6	GSM602950	K562_KAP1	2,173,668	Sage Bionetworks	2010-10-01	[Oligo Array] NimbleGen-Homo_sapiens-2.1M-hg18 (GPL11008)	genomic	Homo sapiens	bone marrow	KAP1 ChIP DNA from K562 Total input DNA from K562
7	GSM565259	Raji 1X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	lymphnode	Raji 1X
8	GSM565260	Raji 2X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	lymphnode	Raji 2X
9	GSM565261	H929 1X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:MIRA-enriched DNA Input DNA title:H929 1X description:MIRA-chip from H929
10	GSM565262	H929 2X	2,173,622	SRA International, Inc	2010-07-12	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:MIRA-enriched DNA Input DNA title:H929 2X description:MIRA-chip from H929
11	GSM737207	Flag_Rpb2	2,173,622	uw-madison	2011-06-03	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:FLAG ChIP DNA from wt Rpb2 Input ChIP DNA from wt Rpb2 title:Flag_Rpb2
12	GSM737208	Flag_delta_flap_Rpb2	2,173,622	uw-madison	2011-06-03	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:FLAG ChIP DNA from delta flap Rpb2 Input ChIP DNA from delta flap Rpb2 title:Flag_delta_flap_Rpb2
13	GSM737209	8wg16_Rpb2	2,173,622	uw-madison	2011-06-03	[Oligo Array] 080814_HG18_Deluxe_Promoter_HX1 (GPL10671)	genomic	Homo sapiens	unclassified	source_name:8wg16 ChIP DNA from wt Rpb2 Input ChIP DNA from wt Rpb2 title:8wg16_Rpb2
14	GSM455529	Fibroblast 6 input, methyl-depleted	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	[Oligo Array] NimbleGen Human 2.1M array (GPL9275)	genomic	Homo sapiens	lung	Input fraction from MRC5 Methyl-depleted fraction from MRC5
15	GSM455530	iPS 6 input, methyl-depleted	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	[Oligo Array] NimbleGen Human 2.1M array (GPL9275)	genomic	Homo sapiens	lung	Input fraction from MRC5-iPS7 Methyl-depleted fraction from MRC5-iPS7
16	GSM455531	Fibroblast 5 input, methyl-depleted	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	[Oligo Array] NimbleGen Human 2.1M array (GPL9275)	genomic	Homo sapiens	skin	Fibroblast 5 input, methyl-depleted
17	GSM455532	iPS 5 input, methyl-depleted	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	[Oligo Array] NimbleGen Human 2.1M array (GPL9275)	genomic	Homo sapiens	unclassified	source_name:Input fraction from SBDS-iPS3 Methyl-depleted fraction from SBDS-iPS3 title:iPS 5 input, methyl-depleted description:DNA methylation data from iPS cells
18	GSM455533	Fibroblast 1 input, methyl-depleted	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	[Oligo Array] NimbleGen Human 2.1M array (GPL9275)	genomic	Homo sapiens	skin	Fibroblast 1 input, methyl-depleted
19	GSM455534	iPS 1 input, methyl-depleted	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	[Oligo Array] NimbleGen Human 2.1M array (GPL9275)	genomic	Homo sapiens	unclassified	source_name:Input fraction from DMD-iPS1 Methyl-depleted fraction from DMD-iPS1 title:iPS 1 input, methyl-depleted description:DNA methylation data from iPS cells
20	GSM455535	Fibroblast 2 input, methyl-depleted	2,162,406	Johns Hopkins University School of Medicine	2009-09-23	[Oligo Array] NimbleGen Human 2.1M array (GPL9275)	genomic	Homo sapiens	skin	Fibroblast 2 input, methyl-depleted

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