Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(21,397)
  Primates
(80)
  Rodents
(9,352)
  Mammals
(342)
  Vertebrates
(534)
  Invertebrates
(726)
  Plants
(6,411)
  Bacteria
(1,450)
  Viruses
(9)
  Phages
(0)
  Unclassified
(109)
  All
(40,410)
 
  SAGE NlaIII
(17)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(9,515)
  Tiling Array
(532)
  cDNA Array
(1,784)
  Oligo Array
(8,719)
  Bead Array
(667)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(47)
  HT-Seq
(106)
  Other
(10)
  All
(21,397)
 
  brain
(0)
  blood
(12)
  connective
(12)
  reproductive
(0)
  muscular
(0)
  digestive
(4)
  liver
(0)
  lung
(8)
  urinary
(0)
  endo/exo-crine
(0)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(1)
  unclassified
(10)
  all
(47)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM1121842 plasma-RA 1 768 Kyoto University 2013-04-12 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v3.0 (GPL11316) RNA Homo sapiens
Homo sapiens
unclassified source_name:plasma-RA title:plasma-RA 1 description:Test
2 GSM1121843 plasma-RA 2 768 Kyoto University 2013-04-12 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v3.0 (GPL11316) RNA Homo sapiens
Homo sapiens
unclassified source_name:plasma-RA title:plasma-RA 2 description:Test
3 GSM1121844 plasma-RA 3 768 Kyoto University 2013-04-12 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v3.0 (GPL11316) RNA Homo sapiens
Homo sapiens
unclassified source_name:plasma-RA title:plasma-RA 3 description:Test
4 GSM1121845 plasma-HC 1 768 Kyoto University 2013-04-12 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v3.0 (GPL11316) RNA Homo sapiens
Homo sapiens
peripheral blood plasma-HC 1
5 GSM1121846 plasma-HC 2 768 Kyoto University 2013-04-12 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v3.0 (GPL11316) RNA Homo sapiens
Homo sapiens
unclassified source_name:plasma-HC title:plasma-HC 2 description:Control
6 GSM1121847 plasma-HC 3 768 Kyoto University 2013-04-12 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v3.0 (GPL11316) RNA Homo sapiens
Homo sapiens
unclassified source_name:plasma-HC title:plasma-HC 3 description:Control
7 GSM1253404 A549:TGF-β- 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_after TGF-β1 exposure
8 GSM1253405 A549:TGF-β+ 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_before TGF-β1 exposure
9 GSM1253406 LC2/ad:TGF-β- 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_after TGF-β1 exposure
10 GSM1253407 LC2/ad:TGF-β+ 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_before TGF-β1 exposure
11 GSM1253408 PC3:TGF-β- 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_after TGF-β1 exposure
12 GSM1253409 PC3:TGF-β+ 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_before TGF-β1 exposure
13 GSM1253410 PC9:TGF-β- 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_after TGF-β1 exposure
14 GSM1253411 PC9:TGF-β+ 754 Nippon Medical School 2013-10-29 [RT-PCR] TaqMan® Array Human MicroRNA Cards Set v2.0 A/B (GPL17853) RNA Homo sapiens
Homo sapiens
lung lung adenocarcinoma cell line_before TGF-β1 exposure
15 GSM1100823 K562_Normoxia_24h_cell 384 Tokyo Medical University 2013-03-19 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v2.0 (GPL8979) RNA Homo sapiens
Homo sapiens
bone marrow CML-derived cell line
16 GSM1100824 K562_Hypoxia_24h_cell 384 Tokyo Medical University 2013-03-19 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v2.0 (GPL8979) RNA Homo sapiens
Homo sapiens
bone marrow CML-derived cell line
17 GSM1100825 K562_Normoxia_24h_exosome 384 Tokyo Medical University 2013-03-19 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v2.0 (GPL8979) RNA Homo sapiens
Homo sapiens
bone marrow exosome derived from CML cell line
18 GSM1100826 K562_Hypoxia_24h_exosome 384 Tokyo Medical University 2013-03-19 [RT-PCR] Applied Biosystems Human Taqman MicroRNA Array v2.0 (GPL8979) RNA Homo sapiens
Homo sapiens
bone marrow exosome derived from CML cell line
19 GSM1103460 SUDHL4_Normoxia_24h_cell 384 Tokyo Medical University 2013-03-21 [RT-PCR] Taqman Array Human MicroRNA A Card v2.0 (GPL13987) RNA Homo sapiens
Homo sapiens
lymphnode Diffuse large B cell lymphoma-derived cell line
20 GSM1103461 SUDHL4_Hypoxia_24h_cell 384 Tokyo Medical University 2013-03-21 [RT-PCR] Taqman Array Human MicroRNA A Card v2.0 (GPL13987) RNA Homo sapiens
Homo sapiens
lymphnode Diffuse large B cell lymphoma-derived cell line
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