Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(516,316)		   Primates
(5,042)		   Rodents
(188,439)		   Mammals
(16,727)		   Vertebrates
(18,617)		   Invertebrates
(38,231)		   Plants
(93,098)		   Bacteria
(39,426)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,385)		   All
(924,376)		  
  SAGE NlaIII
(756)		   SAGE RsaI
(0)		   SAGE Sau3A
(15)		   MPSS
(35)		   GeneChip
(240,276)		   Tiling Array
(9,515)		   cDNA Array
(39,308)		   Oligo Array
(106,902)		   Bead Array
(94,050)		   Protein Array
(0)		   Antibody
(1,134)		   RT-PCR
(3,321)		   HT-Seq
(14,651)		   Other
(6,352)		   All
(516,316)		  
  brain
(121)		   blood
(123)		   connective
(85)		   reproductive
(47)		   muscular
(12)		   digestive
(44)		   liver
(17)		   lung
(83)		   urinary
(11)		   endo/exo-crine
(128)		   embryo
(25)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(46)		   unclassified
(14)		   all
(756)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM384141 LSAGE_Testis_Embryonal_Carcinoma_CL_hs0212 795,025 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 testis testis, cancer, cell line, long sage, slx-sage, solexa sage, adult, male
2 GSM160696 Human_R_H3K27me3 542,347 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Human_R_H3K27me3 title:Human_R_H3K27me3 description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
3 GSM160695 Human_A_T_H3ac 425,762 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Human_A_T_H3ac title:Human_A_T_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
4 GSM160698 Human_R_T_H3ac 414,655 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Human_R_T_H3ac title:Human_R_T_H3ac description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
5 GSM160697 Human_R_H3K4me3 395,216 NHLBI, NIH 2007-02-06 [SAGE NlaIII] GMAT (Genome-wide MAppping Technique) [NlaIII: Homo Sapiens] tag list (GPL4812) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Human_R_H3K4me3 title:Human_R_H3K4me3 description:The GMAT (Genome-wide MApping Technique) was developed by the combination of ChIP (chromatin immunoprecipitation) and SAGE(serial analysis of gene expression) protocols. Briefly, the chromatin prepared by sonication is subject to immunoprecipitation using specific antibody. DNA from precipitated chromatin is ligated with biotinylated linker and digested with NlaIII restriction enzyme. The DNA fragments with biotinylated linker are isolated and ligated with NlaIII-site specific linker. The DNA is cut with MmeI restriction enzyme to generate 21-base seqeunce tags and ligated each other to form ditags. After removing linkers by NlaIII, isolated ditags are concatenated and determined the sequence. The genomic position of tags is identified by DNA sequences and the detected number of each tag sequence represents the degree of enrichment by means of specific antibody.
6 GSM384135 LSAGE_Skin_Normal_B_hs0271 382,357 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, normal, bulk, long sage, slx-sage, solexa sage, male
7 GSM384134 LSAGE_Skin_Melanoma_B_hs0276 378,065 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
8 GSM384127 LSAGE_Skin_Cancer_B_hs0279 356,844 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, basal cell carcinoma
9 GSM384109 LSAGE_Eye_Retinoblastoma_B_hs0389 331,358 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 eye eye, cancer, bulk, retinoblastoma, long sage, slx-sage, solexa sage, female
10 GSM384149 LSAGE_Vein_normal_B_hs0237 322,395 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 vein LSAGE_Vein_normal_B_hs0237
11 GSM384146 LSAGE_Uterus_normal_B_hs0195 305,922 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 uterus uterus, normal, bulk, long sage, slx-sage, solexa sage, female
12 GSM384118 LSAGE_Lymph_node_Lymphoma_B_hs0196 305,379 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 lymphnode lymph node, cancer, bulk, long sage, slx-sage, solexa sage, lymphoma
13 GSM384144 LSAGE_Urothelium_normal_B_hs0239 300,871 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 unclassified source_name:other, normal, bulk, long sage, slx-sage, solexa sage title:LSAGE_Urothelium_normal_B_hs0239 description:CGAP_Numeric_library_ID: 2255 Tagging_enzyme: Mme I Library_producer: Martin Hirst, Functional Genomics Lab Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, Canada
14 GSM384104 LSAGE_Embryonic_stem_cell_normal_CL_hs0238 293,179 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 embryo stem cell, normal, antibody purified, long sage, slx-sage, solexa sage, male
15 GSM384133 LSAGE_Skin_Melanoma_B_hs0275 282,858 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
16 GSM384129 LSAGE_Skin_Cancer_B_hs0283 281,735 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, squamous cell carcinoma
17 GSM384131 LSAGE_Skin_Melanoma_B_hs0273 278,074 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, cancer, bulk, long sage, slx-sage, solexa sage, male, melanoma
18 GSM384110 LSAGE_Foreskin_normal_B_hs0305 267,732 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 skin skin, normal, bulk, long sage, slx-sage, solexa sage, male, foreskin, baby
19 GSM384145 LSAGE_Uterus_Normal_B_hs0194 262,005 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 uterus uterus, normal, bulk, long sage, slx-sage, solexa sage, female
20 GSM384044 LSAGE_Bone_Marrow_Cancer_FS_hs0405 259,085 National Cancer Institute 2009-03-19 [SAGE NlaIII] SAGE:17:NlaIII:Homo sapiens (GPL1485) SAGE Homo sapiens
Homo sapiens		 bone marrow bone marrow, cancer, flow-sorted, long sage, slx-sagelite, solexa sagelite, male, facs-sorted rna from single cml patient lin-cd38-rho-cells
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