Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(85)		   Primates
(0)		   Rodents
(42)		   Mammals
(0)		   Vertebrates
(0)		   Invertebrates
(0)		   Plants
(18)		   Bacteria
(41)		   Viruses
(0)		   Phages
(0)		   Unclassified
(0)		   All
(252)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(0)		   Tiling Array
(9)		   cDNA Array
(43)		   Oligo Array
(25)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(85)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9708 NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0 385,806 University of Cambridge 2009-11-20 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0, Genome build: hg18 NimbleGen description file: 2006-07-27_HG18_WG_CGH.ndf NimbleGen description file: 2006-07-27_HG18_WG_CGH.pos DESIGN_ID: 4366 DESIGN_NAME: 2006-07-27_HG18_WG_CGH Version: 1.0 Probe Length: 50-75mer Median Probe Spacing: 6270bp Catalog number: B4366-00-01 Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis.
2 GPL8694 NimbleGen Homo sapiens 384K hg18 tiling set 16 383,527 King's College London 2009-06-10 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens 384K hg18 tiling set 16,
3 GPL8122 NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP) 94,383 Imperial College London 2009-01-27 Nimblegen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP),
4 GPL6783 MHP Human Chromosome 7 tiling-path CGH array 2,065 University of Cambridge 2008-04-25 Department of Pathology, University of Cambridge Homo sapiens
Homo sapiens		 Tiling Array spotted DNA/cDNA, MHP Human Chromosome 7 tiling-path CGH array, The chromosome 7 tile path array clone set has been assembled by the Mapping Core, Map Finishing and Microarray Facility groups of the Wellcome Trust Sanger Institute, Hinxton, UK. Additional clones were also kindly supplied by the Wellcome Trust Sanger Institute. The 5Mb clone set has been selected from the 1Mb clone set assembled in the Wellcome Trust Sanger Institute. The array has 16 subarrays (4 rows by 4 columns), each subarray consisted of 18 rows by 19 columns.
5 GPL2988 Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0 361,042 Sanger Institute 2005-10-19 NimbleGen Inc. WI, USA Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0, Custom fine-tiling array of 385k in situ isothermal oligonucleotide probes (Tm=76oC, 45mer - 85mer). Array allows fine detail aCGH of 131 contiguous chromosomal regions of suspected human copy number polymorphism.
6 GPL16498 Nimblegen_Human_720K_Chr11extra 718,882 The University of Edinburgh 2013-01-11 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Nimblegen_Human_720K_Chr11extra, HG19 NCBI37 Tiling probes across Chr11 and parts of Chr17 and Chr22 120625_HG19_chr11extra_NG_CGH.ndf 120625_HG19_chr11extra_NG_CGH.pos
7 GPL15904 Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions 385,775 University of Bristol 2012-08-08 Nimblegen (Roche) Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions, Format: 385K Build: HG18 Probe Length: 50-75mer Median Probe Spacing: 101bp Promoter Upstream Tiling: 800bp Promoter Downstream Tiling: 200bp Designid: 5179 Designname: 2007-01-30_HG18_5189_refseq Recommended Storage: Store arrays desiccated at room temperature. Tiled regions: WT1 region (chr11:31440000-33360000), H19 DMR (chr11:1975000-1982000), IGF2 DMR0 (chr11:2126000-2128000).
8 GPL14788 Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array 71,566 Univeristy of Edinburgh 2011-10-25 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array, Human genome build hg17 Tiles all biologically significant ENCODE regions 2007-04-30_HG17_encode_4plex.ndf 2007-04-30_HG17_encode_4plex.pos
9 GPL10113 NimbleGen/UCL human 388K tiling array 387,835 UCL Cancer Institute 2010-02-26 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array spotted oligonucleotide, NimbleGen/UCL human 388K tiling array, Annotation from NCBI human build 36. Tiling of various regions on NCBI human build 36 (hg18), including selected regions designated as controls by the customer. Probes (control and experimental) selected from hg18_tiling at int50win25. Mean probe spacing at 74bps for both sets.
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