Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(22,139)
  Primates
(288)
  Rodents
(15,364)
  Mammals
(970)
  Vertebrates
(1,364)
  Invertebrates
(4,819)
  Plants
(7,611)
  Bacteria
(3,409)
  Viruses
(59)
  Phages
(8)
  Unclassified
(433)
  All
(56,529)
 
  SAGE NlaIII
(78)
  SAGE RsaI
(0)
  SAGE Sau3A
(5)
  MPSS
(2)
  GeneChip
(8,352)
  Tiling Array
(1,621)
  cDNA Array
(1,937)
  Oligo Array
(5,065)
  Bead Array
(2,741)
  Protein Array
(0)
  Antibody
(38)
  RT-PCR
(205)
  HT-Seq
(1,977)
  Other
(117)
  All
(22,139)
 
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Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Custom MHC array analysis of lymphoblastoid cell lines (GSE22453) [Tiling Array] [MHC_MAP1_univ] Custom Affymetrix MHC Tiling Array (GPL10567) Inserm U958, Universite Paris Denis Diderot - Paris 7 2010-06-18 Homo sapiens
Homo sapiens
6,958,188
(386,566 x 18)
18 by_platform
by_series
2 The haplo-spliceo-transcriptome of the human Major Histocompatibility Complex (GSE22455) [Tiling Array] [MHC_MAP1_univ] Custom Affymetrix MHC Tiling Array (GPL10567) Inserm U958, Universite Paris Denis Diderot - Paris 7 2010-06-18 Homo sapiens
Homo sapiens
6,958,188
(386,566 x 18)
18 by_platform
by_series
3 5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary (tiling array) (GSE40166) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Centre for Addiction and Mental Health 2012-08-16 Homo sapiens
Homo sapiens
72
(0 x 72)
72 by_platform
by_series
4 5-hmC in the brain: abundance in synaptic genes and differences at the exon-intron boundary (GSE40167) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Centre for Addiction and Mental Health 2012-08-16 Homo sapiens
Homo sapiens
72
(0 x 72)
72 by_platform
by_series
5 DNA unmethylome profiling by covalent capture of CpG sites (microarray) (GSE49044) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Centre for Addiction and Mental Health 2013-07-19 Homo sapiens
Homo sapiens
42
(0 x 42)
13 29 by_platform
by_series
6 DNaseI sensitivity/hypersensitivity (GSE8222) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) University of Washington 2007-06-21 Homo sapiens
Homo sapiens
40
(0 x 40)
3 4 5 4 5 1 1 17 by_platform
by_series
7 ChIP-chip of 38 nuclear receptors and NR co-factors in breast cancer cell line MCF7 (GSE41995) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) University of Chicago IGSB 2012-11-01 Homo sapiens
Homo sapiens
34
(0 x 34)
34 by_platform
by_series
8 Tissue/Cell DNaseI sensitivity/hypersensitivity screening II (GSE11298) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) University of Washington 2008-04-29 Homo sapiens
Homo sapiens
30
(0 x 30)
19 11 by_platform
by_series
9 Methylome-wide comparison of human genomic DNA extracted from whole blood and from EBV-transformed lymphocyte cell lines (GSE35204) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Virginia Commonwealth University 2012-01-18 Homo sapiens
Homo sapiens
30
(0 x 30)
30 by_platform
by_series
10 DNaseI sensitivity/hypersensitivity Part II (GSE7411) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) University of Washington 2007-03-30 Homo sapiens
Homo sapiens
29
(0 x 29)
3 4 4 5 1 1 11 by_platform
by_series
11 5-methylcytosine ChIP-on-Chip (MeDIP) of sporadic amyotrophic lateral sclerosis and control human brains (GSE12525) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) University of Sydney 2008-08-22 Homo sapiens
Homo sapiens
22
(0 x 22)
21 1 by_platform
by_series
12 Genome-wide Binding Site Mapping of Retinoic Acid Receptors and Coregulators in Breast Cancer Cells (GSE15244) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) MD Anderson Cancer Center 2009-03-16 Homo sapiens
Homo sapiens
18
(0 x 18)
18 by_platform
by_series
13 ChIP-chip analysis of transcription factors GABP, SRF, TAF, and NRSF on Affymetrix whole genome tiling arrays 2.0R (GSE8489) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Stanford University 2007-07-16 Homo sapiens
Homo sapiens
17
(0 x 17)
10 4 3 by_platform
by_series
14 DNaseI sensitivity/hypersensitivity Part I (GSE7168) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) University of Washington 2007-03-01 Homo sapiens
Homo sapiens
11
(0 x 11)
5 6 by_platform
by_series
15 Genome-wide Binding Site Mapping of Estrogen Receptor alpha and c-MYC in Breast Cancer Cells (GSE10800) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) MD Anderson Cancer Center 2008-03-12 Homo sapiens
Homo sapiens
9
(0 x 9)
9 by_platform
by_series
16 Most “dark matter” transcripts are associated with known genes (GSE19289) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Mount Sinai School of Medicine 2009-12-02 Homo sapiens
Homo sapiens
8
(0 x 8)
2 2 2 2 by_platform
by_series
17 TCF4 and CDX2, major transcription factors for intestinal function, converge on the same cis-regulatory regions (GSE22572) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Rutgers, the State University of New Jersey 2010-06-25 Homo sapiens
Homo sapiens
6
(0 x 6)
6 by_platform
by_series
18 ChIP-chip of 6 chromatin marks (FAIRE, H3K4me1, H3K4me3, H3K27me3, H3R17me2, H3AZAce) in breast cancer cell line MCF7 (GSE42617) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) University of Chicago IGSB 2012-11-29 Homo sapiens
Homo sapiens
6
(0 x 6)
6 by_platform
by_series
19 Growth Factor Stimulation Induces a Distinct ERα Cistrome Underlying Breast Cancer Endocrine Resistance (GSE26081) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Norris Cotton Cancer Center/Dartmouth Medical School 2010-12-15 Homo sapiens
Homo sapiens
5
(0 x 5)
5 by_platform
by_series
20 Coativator Function Defines the Active Estrogen Receptor Alpha Cistrome (GSE19328) [Tiling Array] [Hs35b_P07R] Affymetrix Human Tiling 2.0R Set, Array 7 (GPL4916) Norris Cotton Cancer Center/Dartmouth Medical School 2009-12-04 Homo sapiens
Homo sapiens
4
(0 x 4)
1 3 by_platform
by_series
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