Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(521,594)		   Primates
(5,069)		   Rodents
(189,292)		   Mammals
(16,929)		   Vertebrates
(18,759)		   Invertebrates
(38,793)		   Plants
(93,301)		   Bacteria
(39,613)		   Viruses
(1,263)		   Phages
(101)		   Unclassified
(5,497)		   All
(931,947)		  
  SAGE NlaIII
(756)		   SAGE RsaI
(0)		   SAGE Sau3A
(15)		   MPSS
(35)		   GeneChip
(243,618)		   Tiling Array
(9,515)		   cDNA Array
(39,559)		   Oligo Array
(107,373)		   Bead Array
(94,915)		   Protein Array
(0)		   Antibody
(1,134)		   RT-PCR
(3,343)		   HT-Seq
(14,724)		   Other
(6,606)		   All
(521,594)		  
  brain
(684)		   blood
(1,845)		   connective
(1,101)		   reproductive
(479)		   muscular
(63)		   digestive
(381)		   liver
(268)		   lung
(277)		   urinary
(285)		   endo/exo-crine
(1,204)		   embryo
(80)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(975)		   unclassified
(1,873)		   all
(9,515)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM999243 GM12878 PABPC1 RIP RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 unclassified source_name:GM12878 PABP RIP RNA title:GM12878 PABPC1 RIP RNA description:GM12878 PABP RIP RNA Rep 1-3
2 GSM999242 GM12878 ELAVL1 RIP RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 unclassified source_name:GM12878 ELAVL1 RIP RNA title:GM12878 ELAVL1 RIP RNA description:GM12878 ELAVL1 RIP RNA Rep 1-3
3 GSM999241 GM12878 Negative Control RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 unclassified source_name:GM12878 T7 control RIP RNA title:GM12878 Negative Control RNA description:GM12878 T7 RIP RNA Rep 1-3
4 GSM999240 GM12878 Input(Total) RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 unclassified source_name:GM12878 RIP input RNA (total) title:GM12878 Input(Total) RNA description:GM12878 input RNA Rep 1-3
5 GSM999239 K562 PABPC1 RIP RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 bone marrow K562 PABP RIP RNA
6 GSM999238 K562 ELAVL1 RIP RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 bone marrow K562 ELAVL1 RIP RNA
7 GSM999237 K562 Negative Control RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 bone marrow K562 T7 control RIP RNA
8 GSM999236 K562 Input(Total) RNA 0 UAlbany CNSE 2012-09-07 [Tiling Array] Affymetrix ENCODE Tiling Array - ANTISENSE - NCBI build 35 (GPL3111) RNA Homo sapiens
Homo sapiens		 bone marrow K562 RIP input RNA (total)
9 GSM99042 MCF7 E2F1 ChIP_array 40016 385,149 UCDavis 2006-03-06 [Tiling Array] ENCODE NimbleGen hg17_04252005 tiling array (GPL3514) genomic Homo sapiens
Homo sapiens		 breast MCF7 E2F1 ChIP_array 40016
10 GSM99041 HeLa MYC ChIP_array 58908 385,149 UCDavis 2006-03-06 [Tiling Array] ENCODE NimbleGen hg17_04252005 tiling array (GPL3514) genomic Homo sapiens
Homo sapiens		 skin HeLa MYC ChIP_array 58908
11 GSM99040 HeLa MYC ChIP_array 58905 385,149 UCDavis 2006-03-06 [Tiling Array] ENCODE NimbleGen hg17_04252005 tiling array (GPL3514) genomic Homo sapiens
Homo sapiens		 skin HeLa MYC ChIP_array 58905
12 GSM99039 HeLa MYC ChIP_array 46679 385,149 UCDavis 2006-03-06 [Tiling Array] ENCODE NimbleGen hg17_04252005 tiling array (GPL3514) genomic Homo sapiens
Homo sapiens		 skin MYC ChIP HeLa cells matched Total DNA
13 GSM98970 IgG control experiment in HeLa 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 skin IgG control experiment in HeLa
14 GSM98969 Control IgG ChIP_array 31046 in HeLa 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 skin Control IgG ChIP_array 31046 in HeLa
15 GSM98968 Control IgG ChIP_array 33552 in HeLa 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 skin Control IgG ChIP_array 33552 in HeLa
16 GSM98967 HeLa POLII ChIP_array 30633 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 skin HeLa POLII ChIP_array 30633
17 GSM98966 Hela POLII ChIP_array 30516 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 skin Hela POLII ChIP_array 30516
18 GSM98965 HeLa POLII ChIP_array 31014 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 skin HeLa POLII ChIP_array 31014
19 GSM98964 MCF7 E2F1 ChIP_array 31311 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 breast MCF7 E2F1 ChIP_array 31311
20 GSM98963 MCF7 E2F1 ENCODE_array 31300 382,884 UCDavis 2006-03-03 [Tiling Array] ENCODE NimbleGen hg16 tiling array (GPL3508) genomic Homo sapiens
Homo sapiens		 breast MCF7 ChIP Matched Total DNA
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