Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(310)		   Tiling Array
(702)		   cDNA Array
(1,050)		   Oligo Array
(1,326)		   Bead Array
(119)		   Protein Array
(1)		   Antibody
(20)		   RT-PCR
(82)		   HT-Seq
(50)		   Other
(36)		   All
(3,705)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6314 NCI Human Solexa Platform 14814K 14,814,587 National Cancer Institute 2007-12-20 not applicable Homo sapiens
Homo sapiens		 HT Sequencing other, NCI Human Solexa Platform 14814K,
2 GPL7003 MPIMG-Human-Solexa sequencing HEK PolIIa ChIP 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 MPIMG Homo sapiens
Homo sapiens		 HT Sequencing other, MPIMG-Human-Solexa sequencing HEK PolIIa ChIP, Sequencing was carried out using the 1G Illumina Genome Analyser (Solexa)
3 GPL7004 MPIMG-Human-Solexa sequencing-HEK and B cell RNA 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 MPIMG Homo sapiens
Homo sapiens		 HT Sequencing other, MPIMG-Human-Solexa sequencing-HEK and B cell RNA, Sequencing was carried out using the 1G Illumina Genome Analyser (Solexa)
4 GPL6660 Nsp copy number (CN) array (ds2) 6,276,448 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds2), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
5 GPL1485 SAGE:17:NlaIII:Homo sapiens 6,221,157 2004-10-07 Homo sapiens
Homo sapiens		 SAGE NlaIII SAGE NlaIII, SAGE:17:NlaIII:Homo sapiens, This is a virtual platform for longSAGE 17 libraries generated for Homo sapiens using NlaIII as an anchor enzyme. Platform_anchor: NlaIII
6 GPL6659 Nsp copy number (CN) array (ds1) 6,121,086 Affymetrix, Inc 2008-03-27 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Nsp copy number (CN) array (ds1), Research Array The Nsp copy number (CN) array contains 12,339,139 oligonucleotide probes tiled onto two arrays (ds1 and ds2 arrays). Probes were selected to represent each of the 1,330,354 fragments between 200-1100bp predicted to arise after digestion of human genomic DNA with the restriction enzyme NspI. Platform data table annotation based on genome build 35: hg17 (May 2004 build).
7 GPL7026 Human Promoter Array 1.0R - NCBI build_35 5,150,820 University of Tokyo 2008-07-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Human Promoter Array 1.0R - NCBI build_35, For data analysis of the associated Samples, we calculated MAT scores based on the hyridization intensity data of the probes within 500bp windows. The coordinate column in the Platform data table represents the chromosome coordinates for the 500bp window center positions.
8 GPL5295 AFFY Human Phase3 v1.0 - C62 4,919,563 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C62,
9 GPL5249 AFFY Human Phase3 v1.0 - C16 4,422,670 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C16,
10 GPL5267 AFFY Human Phase3 v1.0 - C34 4,320,474 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C34,
11 GPL5246 AFFY Human Phase3 v1.0 - C13 4,240,896 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C13,
12 GPL15746 NimbleGen Human CGH 4.2M Whole-Genome Tiling Array v1.0 array [100710_HG19_WG_CGH_v1.0_UX1] 4,200,002 NimbleGen Systems, Inc. 2012-06-27 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Human CGH 4.2M Whole-Genome Tiling Array v1.0 array [100710_HG19_WG_CGH_v1.0_UX1], Annotation in this record based on hg19. Design name: 100710_HG19_WG_CGH_PERF_01 Design name: 100710_HG19_WG_CGH_PERF_02 Design name: 100710_HG19_WG_CGH_PERF_03 Design id: 538913
13 GPL5250 AFFY Human Phase3 v1.0 - C17 4,120,959 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C17,
14 GPL5235 AFFY Human Phase3 v1.0 - C02 4,053,015 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C02,
15 GPL5306 AFFY Human Phase3 v1.0 - C73 3,959,283 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C73,
16 GPL5290 AFFY Human Phase3 v1.0 - C57 3,943,778 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C57,
17 GPL5284 AFFY Human Phase3 v1.0 - C51 3,878,895 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C51,
18 GPL5260 AFFY Human Phase3 v1.0 - C27 3,855,826 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C27,
19 GPL13490 Affymetrix Human Promoter 1.0R Array [genome build GRCh37] 3,837,458 Medical University Innsbruck 2011-05-04 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix Human Promoter 1.0R Array [genome build GRCh37], Custom probe annotation of Affymetrix Human Promoter 1.0R Tiling microarray. Annotation based on genome build GRCh37 (NCBI build 37; hg19). The data table contains only those probes that have a unique complete alignment to the genome, probes with multiple alignments or additional incomplete alignments (allowing 1 mis-match) were excluded.
20 GPL5248 AFFY Human Phase3 v1.0 - C15 3,694,897 Affymetrix, Inc. 2007-05-23 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, AFFY Human Phase3 v1.0 - C15,
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