Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(67)
  Primates
(1)
  Rodents
(38)
  Mammals
(3)
  Vertebrates
(10)
  Invertebrates
(67)
  Plants
(49)
  Bacteria
(32)
  Viruses
(0)
  Phages
(0)
  Unclassified
(8)
  All
(275)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(3)
  Tiling Array
(16)
  cDNA Array
(27)
  Oligo Array
(19)
  Bead Array
(1)
  Protein Array
(1)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(67)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL4499 Human whole genome tiling array, chip 11 of 14 3,317,284 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 11 of 14,
2 GPL4496 Human whole genome tiling array, chip 08 of 14 3,316,927 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 08 of 14,
3 GPL4495 Human whole genome tiling array, chip 07 of 14 3,207,896 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 07 of 14,
4 GPL4500 Human whole genome tiling array, chip 12 of 14 3,201,270 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 12 of 14,
5 GPL4502 Human whole genome tiling array, chip 13 of 14 3,161,722 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 13 of 14,
6 GPL4490 Human whole genome tiling array, chip 02 of 14 3,121,530 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 02 of 14,
7 GPL4493 Human whole genome tiling array, chip 05 of 14 3,110,356 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 05 of 14,
8 GPL4489 Human whole genome tiling array, chip 01 of 14 3,012,992 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 01 of 14,
9 GPL4497 Human whole genome tiling array, chip 09 of 14 2,995,629 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 09 of 14,
10 GPL4494 Human whole genome tiling array, chip 06 of 14 2,962,602 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 06 of 14,
11 GPL4492 Human whole genome tiling array, chip 04 of 14 2,960,773 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 04 of 14,
12 GPL4491 Human whole genome tiling array, chip 03 of 14 2,924,606 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 03 of 14,
13 GPL4498 Human whole genome tiling array, chip 10 of 14 2,911,857 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 10 of 14,
14 GPL4503 Human whole genome tiling array, chip 14 of 14 1,762,422 Harvard Medical School 2006-10-25 Affymetrix Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human whole genome tiling array, chip 14 of 14,
15 GPL4559 ENCODE NimbleGen hg17 tiling array 391,015 Ludwig Institute for Cancer Research 2006-11-14 NimbleGen Systems Inc. Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, ENCODE NimbleGen hg17 tiling array, 391K element tiling array based on NCBI35 build of the human genome (hg17) and contains overlapping 50-mer oligonucleotides, positioned at every 38 basepairs (bp) throughout the ENCODE regions.
16 GPL4558 ENCODE NimbleGen hg16 tiling array 388,570 Ludwig Institute for Cancer Research 2006-11-13 NimbleGen Systems Inc. Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, ENCODE NimbleGen hg16 tiling array, 388K element tiling array based on NCBI34 build of the human genome (hg16) and contains overlapping 50-mer oligonucleotides, positioned at every 38 basepairs (bp) throughout the ENCODE regions.
17 GPL4600 DFCI_FISHER_HUMAN_Build35_HG17_388K_v1.0 388,222 UCSF 2006-11-28 NimbleGen Systems Inc. Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, DFCI_FISHER_HUMAN_Build35_HG17_388K_v1.0, Chromosome coordinates are based on the Build 35 HG17, May 2004 release.
18 GPL4704 Nimblegen Human 5K promoter array 1 384,877 OSU Medical Center 2006-12-28 Nimblegen Systems Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Nimblegen Human 5K promoter array 1,
19 GPL4599 NimbleGen_1500b_Promoter_Array 359,384 OSU Medical Center 2006-11-28 NimbleGen Systems Inc Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen_1500b_Promoter_Array,
20 GPL4544 Agilent-014584 Human Genome 244K CGH Microarray (Alpha Test) 243,504 Agilent Technologies 2006-11-09 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-014584 Human Genome 244K CGH Microarray (Alpha Test), Alpha test array -- final design is Agilent-014693, P/N G4411B. Arrays of this design have barcodes that begin with 16014584 or 2514584. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
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