| 1 |
GPL11157 |
[Cytogenetics_Array] Affymetrix Cytogenetics Whole-Genome 2.7M Array |
2,795,708 |
Affymetrix, Inc. |
2010-11-03 |
Affymetrix |
Homo sapiens
 |
GeneChip |
in situ oligonucleotide, [Cytogenetics_Array] Affymetrix Cytogenetics Whole-Genome 2.7M Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%chip_type=Cytogenetics_Array #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%dbsnp-date=2010-04-00 #%dbsnp-version=131 #%dgv-date=2010-03-00 #%dgv-version=9 #%hapmap-date=2008-01-08 #%hapmap-version=23 #%netaffx-annotation-date=2010-07-00 #%netaffx-annotation-netaffx-build=31 |
| 2 |
GPL11008 |
NimbleGen-Homo_sapiens-2.1M-hg18 |
2,173,668 |
Sage Bionetworks |
2010-10-01 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen-Homo_sapiens-2.1M-hg18, design ID: 5173 design description: 0701_HG18_TILE_27 native array description file: 0701_HG18_TILE_09_HX1.ndf native array description file: 0701_HG18_TILE_09_HX1.pos |
| 3 |
GPL11319 |
[hGlue2_0_v1] Glue Grant Human Transcriptome Array version 2.0 (GG-H) [exon-level] |
557,413 |
Stanford Genome Technology Center |
2010-12-15 |
Affymetrix Inc |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [hGlue2_0_v1] Glue Grant Human Transcriptome Array version 2.0 (GG-H) [exon-level], Inflammation and the Host Response to Injury Program |
| 4 |
GPL11054 |
Fusion gene microarray, human, 500k, v.2.0. |
537,426 |
Rikshospitalet |
2010-10-14 |
Nimblegen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Fusion gene microarray, human, 500k, v.2.0., |
| 5 |
GPL11357 |
Agilent-028081 Human Genome CGH + SNP Microarray (Feature Number version) |
420,288 |
Agilent Technologies |
2010-12-23 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-028081 Human Genome CGH + SNP Microarray (Feature Number version), 028081_D_20100413 Agilent human genome CGH + SNP 420K microarray design, April 2010 Arrays of this design have barcodes that begin with 16028081 or 2528081. Orientation: Features are numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 6 |
GPL11363 |
Agilent-028081 Human Genome CGH + SNP Microarray (Probe Name version) |
411,052 |
Agilent Technologies |
2010-12-28 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-028081 Human Genome CGH + SNP Microarray (Probe Name version), 028081_D_20100413 Agilent human genome CGH + SNP 420K microarray design, April 2010 Arrays of this design have barcodes that begin with 16028081 or 2528081. |
| 7 |
GPL11313 |
NImbleGen Chromosome 19 Tiling Array |
385,039 |
City of Hope National Medical Center |
2010-12-14 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, NImbleGen Chromosome 19 Tiling Array, Format: 385K Source: UCSC Build: HG18, NCBI 36 Probe Length: 50-75mer Median Probe Spacing: 105 |
| 8 |
GPL11013 |
NimbleGen Human Meth 385K Prom Plus CpG Array [2006-11-02_HG18_CpG_Promo]. |
385,019 |
MUW |
2010-10-04 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen Human Meth 385K Prom Plus CpG Array [2006-11-02_HG18_CpG_Promo]., |
| 9 |
GPL11071 |
NimbleGen custom Human HG18 144-gene region Array |
381,882 |
Beijing Institue of Genomics, Chinese Academy of Science |
2010-10-19 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen custom Human HG18 144-gene region Array, native array description file: 2007-10-25_HG18_QW_ChIP.ndf native array description file: 2007-10-25_HG18_QW_ChIP.pos Genome build information: HG18, build36 ~48,824 Kb of genomic sequences spanning the entire genomic loci of 144 genes and their flanking intergenic regions were examined in the ChIP-on-chip analysis. The custom array contains 381,882 probes with a median probe spacing 110 bp. |
| 10 |
GPL11256 |
NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18) |
375,728 |
Wellcome Trust Sanger Institute |
2010-11-30 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18), Annotation in this record is based on NCBI human build 36 (hg18) We profiled chromatin structure at 62 non-redundant genetic loci representing all known associations (as of November 2009, CEU population) with 11 cardiovascular traits: coronary artery disease (CAD), (early-onset) myocardial infarction (MI), mean platelet volume (MPV), platelet counts (PLT), platelet signaling (PLS), white blood cell counts (WBC), red blood cell counts (RBC), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), systolic blood pressure (SBP), diastolic blood pressure (DBP), hypertension (HYP). We considered only genetic loci that reached genome-wide significance with the threshold of P<5x10-8 in a genome-wide association (GWA) study conducted with individuals of European ancestry. In addition, we selected genetic loci based on biological evidence, where there was suggestive evidence of association. For each locus, we included the entire recombination interval of the index SNP. If a recombination interval exceeded 500 kb, we included the closest target gene ±10 kb. In order to assess patterns of cell type specificity, we included eight lineage-specific reference genes (±2 kb) for each of megakaryocytes, erythroblasts and monocytes on the array. |
| 11 |
GPL11028 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [HuEx-1_0-st-v2,coreR3,A20071112,EP.cdf] |
284,258 |
Oslo University Hospital, The Norwegian Radium Hospital |
2010-10-08 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [HuEx-1_0-st-v2,coreR3,A20071112,EP.cdf], HuEx-1_0-st-v2,coreR3,A20071112,EP.cdf |
| 12 |
GPL11340 |
Agilent-014068 Homo sapiens 185K microarray |
183,328 |
Newcastle University |
2010-12-20 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-014068 Homo sapiens 185K microarray, |
| 13 |
GPL11358 |
Agilent-029830 Human Genome CGH + SNP Microarray (Feature Number version) |
180,880 |
Agilent Technologies |
2010-12-23 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-029830 Human Genome CGH + SNP Microarray (Feature Number version), 029830_D_20100817 ISCA plus CGH+SNP 180K Microarray Arrays of this design have barcodes that begin with 16029830 or 2529830. Orientation: Features are numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 14 |
GPL11365 |
Agilent-029830 Human Genome CGH + SNP Microarray (Probe Name version) |
170,359 |
Agilent Technologies |
2010-12-28 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-029830 Human Genome CGH + SNP Microarray (Probe Name version), 029830_D_20100817 ISCA plus CGH+SNP 180K Microarray Arrays of this design have barcodes that begin with 16029830 or 2529830. |
| 15 |
GPL11196 |
Custom NimbleGen Nucleosome Position Analysis Array [080108_HG18_GS_ChIP] |
86,118 |
Tufts Medical Center |
2010-11-11 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Custom NimbleGen Nucleosome Position Analysis Array [080108_HG18_GS_ChIP], Custom array for mapping nucleosome positions on glucocorticoid receptor and cell-cycle regulated genes. Oligos on the array all map to a single location in the human hg18 genome build (also called 36.1). Closely tiled genomic microarray for Chip2 and nucleosome position analysis, covering ~50kb regions of select human genes that are regulated by human SWI/SNF and/or GR. Probes selected from OID12189_redo, int2, length 50 of various HG18 regions and customer supplied sequences, mean 9bp, median 10. DESIGN_ID: 6938 DESIGN_NAME: 080108_HG18_GS_ChIP |
| 16 |
GPL11289 |
Nimblegen Homo sapiens HG18 Expression Array 4x72k (All Probes) |
71,998 |
NimbleGen Systems, Inc. |
2010-12-07 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Nimblegen Homo sapiens HG18 Expression Array 4x72k (All Probes), This is a whole genome human expression array in 4-plex format provided by Nimblegen. See manufacturer's website at http://www.nimblegen.com/. Format: 4x72K Source: NCBI Build: HG18 Probe Length: 60mer Design Name: HG18 60mer expr 4plex Genes: 24,000 Probes/ Target: 3 Replicates: 1 |
| 17 |
GPL11305 |
Agilent Technologies Custom microarray (SurePrint G3 Custom CGH, 8 Ã…~ 60 K) |
62,976 |
Dana-Farber Cancer Institute |
2010-12-10 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent Technologies Custom microarray (SurePrint G3 Custom CGH, 8 Ã…~ 60 K), |
| 18 |
GPL11339 |
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray |
62,976 |
University Hospital Regensburg |
2010-12-20 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray, |
| 19 |
GPL11329 |
CodeLink Human Whole Genome Bioarray |
54,902 |
Childrens Mercy Hospital |
2010-12-16 |
Applied Microarray, Inc. |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, CodeLink Human Whole Genome Bioarray, |
| 20 |
GPL11010 |
CodeLink Human Whole Genome Bioarray |
54,359 |
Hospital General Gregorio Marañon |
2010-10-04 |
GE Healthcare |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, CodeLink Human Whole Genome Bioarray, |
|