Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(20)
  Primates
(0)
  Rodents
(24)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(18)
  Bacteria
(3)
  Viruses
(0)
  Phages
(0)
  Unclassified
(2)
  All
(68)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(7)
  Tiling Array
(0)
  cDNA Array
(4)
  Oligo Array
(5)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(3)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(20)
 
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL15974 Human Exon 1.0 ST Array [CDF: Brainarray Version 9.0.1, HsEx10stv2_Hs_REFSEQ] 56,283 Boehringer Ingelheim RCV 2012-08-21 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Human Exon 1.0 ST Array [CDF: Brainarray Version 9.0.1, HsEx10stv2_Hs_REFSEQ],
2 GPL15009 Austrain Institution of Technology Protein Array 642 642 Austrian Institution of Technology 2011-12-14 Austrian Institute of Technology Homo sapiens
Homo sapiens
Other spotted peptide or protein, Austrain Institution of Technology Protein Array 642,
3 GPL14559 RayBio Human Cytokine Antibody Array G Series 2000; 6-8 array 60 Medical University Innsbruck 2011-09-09 RayBiotech, Inc. Homo sapiens
Homo sapiens
Antibody antibody, RayBio Human Cytokine Antibody Array G Series 2000; 6-8 array, Human 6 - 8 arrays.gal
4 GPL14560 RayBio Human Cytokine Antibody Array G Series 2000; 7-8 array 60 Medical University Innsbruck 2011-09-09 RayBiotech, Inc. Homo sapiens
Homo sapiens
Antibody antibody, RayBio Human Cytokine Antibody Array G Series 2000; 7-8 array, Human 7 - 8 arrays.gal
5 GPL14561 RayBio Human Cytokine Antibody Array G Series 2000; 8-8 array 54 Medical University Innsbruck 2011-09-09 RayBiotech, Inc. Homo sapiens
Homo sapiens
Antibody antibody, RayBio Human Cytokine Antibody Array G Series 2000; 8-8 array, Human 8 - 8 arrays.gal
6 GPL13490 Affymetrix Human Promoter 1.0R Array [genome build GRCh37] 3,837,458 Medical University Innsbruck 2011-05-04 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix Human Promoter 1.0R Array [genome build GRCh37], Custom probe annotation of Affymetrix Human Promoter 1.0R Tiling microarray. Annotation based on genome build GRCh37 (NCBI build 37; hg19). The data table contains only those probes that have a unique complete alignment to the genome, probes with multiple alignments or additional incomplete alignments (allowing 1 mis-match) were excluded.
7 GPL13454 Affymetrix Human Exon 1.0 ST Array, Ensembl transcript probe sets [custom CDF: huex10stv2_58_37c_0112.cdf] 119,429 Medical University Innsbruck 2011-04-27 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix Human Exon 1.0 ST Array, Ensembl transcript probe sets [custom CDF: huex10stv2_58_37c_0112.cdf], Probe set data extracted from custom CDF: huex10stv2_58_37c_0112.cdf CDF contains probe set definitions for Ensembl transcripts (i.e. one probe set per transcript, probe sets with identical probe content were merged; annotation based on Ensembl version 58). Probe sequences were re-aligned to the human genomic DNA sequence (GRCh37) and subsequently annotated to Ensembl genes/transcripts/exons. Probes with multiple alignments, additional alignments allowing one missmatch or a C-G content higher 18 were discarded.
8 GPL11013 NimbleGen Human Meth 385K Prom Plus CpG Array [2006-11-02_HG18_CpG_Promo]. 385,019 MUW 2010-10-04 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human Meth 385K Prom Plus CpG Array [2006-11-02_HG18_CpG_Promo].,
9 GPL10063 [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array (CDF: HuGene10stv1_Hs_REFSEQ.cdf) 29,875 MFPL 2010-02-18 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array (CDF: HuGene10stv1_Hs_REFSEQ.cdf),
10 GPL8476 Alternative Human Exon 1.0 ST Array [custom CDF: huex10stv2_52_36n_0110-bin.cdf] 131,665 Medical University Innsbruck 2009-04-24 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Alternative Human Exon 1.0 ST Array [custom CDF: huex10stv2_52_36n_0110-bin.cdf], Probe set data extracted from custom CDF [huex10stv2_52_36n_0110-bin.cdf]
11 GPL8150 Stanford Microarray Functional Genomics Homo sapiens 34.6K 34,599 Medical University of Vienna 2009-02-03 Stanford: functional genomics facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Stanford Microarray Functional Genomics Homo sapiens 34.6K,
12 GPL6609 Alternative Human Exon 1.0 ST Array [custom pri-miRNA meta-probeset mappings] 519 Medical University Innsbruck 2008-03-19 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Alternative Human Exon 1.0 ST Array [custom pri-miRNA meta-probeset mappings], The probe set groupings in the below table were custom-derived based on Affymetrix Netaffx 24 (November 2007). The pre-miRNA-sequences correspond to Sanger miRBase version 10.1
13 GPL6608 Alternative Human Exon 1.0 ST Array [custom pre-miRNA probe annotations] 253 Medical University Innsbruck 2008-03-19 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Alternative Human Exon 1.0 ST Array [custom pre-miRNA probe annotations], Affymetrix Human Exon 1.0 ST Array probe sequences where aligned with pre-miRNA sequences from the sanger miRBase (version 10.1). All probes with 100% sequence matches to the same pre-miRNAs are defined as probeset to detect the specific pre-miRNA.
14 GPL4781 GUT Homo sapiens 43K Arrays Batch 03 43,200 Innsbruck Medical University 2007-01-24 Graz University of Technology, Bioinformatics Group Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, GUT Homo sapiens 43K Arrays Batch 03,
15 GPL4203 ARCS_human_1040_tc2 1,040 ARC Seibersdorf research 2006-08-23 ARC Research Centers__Molecular Diagnostics Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, ARCS_human_1040_tc2,
16 GPL4190 ARCS_human_1040_BCv3 1,040 ARC Seibersdorf research 2006-08-21 ARC Research Centers__Molecular Diagnostics Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, ARCS_human_1040_BCv3,
17 GPL4192 ARCS_human_1040_BCv5 1,040 ARC Seibersdorf research 2006-08-21 ARC Research Centers__Molecular Diagnostics Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, ARCS_human_1040_BCv5,
18 GPL3784 PIQOR Immunology Microarray Human Antisense 6,144 Medical University of Vienna 2006-05-19 Miltenyi Biotec GmbH Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, PIQOR Immunology Microarray Human Antisense,
19 GPL3073 UHN Human 19K v7 array 19,200 ARC Seibersdorf research GmbH 2005-11-11 UHN Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, UHN Human 19K v7 array,
20 GPL1260 GLI1 and GLI2 target genes 11,520 University of Salzburg 2004-05-25 Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, GLI1 and GLI2 target genes, Human Drug Target clone set (Incyte), PCR-amplified, in-house spotted on nylon filters (MicroGridII, BioRobotics, UK), hybridised with total RNA prepared from tetracycline-inducible HaCaT cells expressing GLI1 or GLI2 Keywords = GLI target genes