| 1 |
GPL1459 |
RNG-MRC_HU2k_v1 |
18,432 |
IPMC/CNRS |
2004-09-21 |
|
Homo sapiens
 |
cDNA Array |
spotted DNA/cDNA, RNG-MRC_HU2k_v1, RNG-MRC_HU2k_v1 |
| 2 |
GPL1460 |
RNG-MRC_HU2k_v2 |
9,216 |
IPMC/CNRS |
2004-09-21 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, RNG-MRC_HU2k_v2, RNG-MRC_HU2k_v2 |
| 3 |
GPL1456 |
RNG-MRC_HU25k_NICE |
27,648 |
IPMC/CNRS |
2004-09-17 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, RNG-MRC_HU25k_NICE, RNG-MRC_HU25k_NICE |
| 4 |
GPL1454 |
RenLab ENCODE PCR tiling array |
25,392 |
Ludwig Institute for Cancer Research |
2004-09-16 |
|
Homo sapiens
|
Tiling Array |
spotted DNA/cDNA, RenLab ENCODE PCR tiling array, 24,537 non-repetitive sequences that are greater than 100 bps within the 44 ENCODE regions were PCR amplified. All the purified PCR products in a total of 66 384-well plates were spoted on glass slide using a contact printer. There are a total of 48 blocks, with 23 x 23 dimension in each array. Keywords = ENCODE Keywords = PCR tiling array Keywords = Bing Ren |
| 5 |
GPL1453 |
Mergen H05 |
12,800 |
Mergen Ltd |
2004-09-16 |
Mergen |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, Mergen H05, Mergen's H05 array is an oligo-based array representing 11,904 unigene human genes |
| 6 |
GPL1449 |
GE Codelink Human Uniset I, II, and 20K |
19,881 |
MassGeneral Institute for Neurodegeneration |
2004-09-15 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, GE Codelink Human Uniset I, II, and 20K, GE/Amersham Codelink Human Uniset I, II, and 20K oligonucleotide arrays |
| 7 |
GPL1448 |
SHDK |
43,104 |
Stanford Microarray Database (SMD) |
2004-09-14 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, SHDK, Manufacturer = Stanford Functional Genomics Facility, Stanford School of Medicine Platform_coating = unknown_surface_type Platform_support = glass |
| 8 |
GPL1443 |
Massively Parallel Signature Sequencing - MPSS (classic method) |
391,669 |
Lynx Therapeutics, Inc. |
2004-09-10 |
|
Homo sapiens
|
MPSS |
MPSS, Massively Parallel Signature Sequencing - MPSS (classic method), Sequencing from the 3' most DpnII site from mRNA using Lynx's MPSS technology. MPSS allows a comprehensive survey of all expressed transcripts in a cell or tissue, without apriori knowledge. This dataset was annotated using a combination of LocusLink, Unigene (build 171) and the latest human build as provided from UCSC (hg16). Annotation Classe Table: Virtual Signature Class mRNA Orientation Poly-Adenylation Features Position 0 Either - Repeat Warning Not applicable Not applicable 1 Forward Strand Poly-A Signal, Poly-A Tail 3' most 2 Forward Strand Poly-A Signal 3' most 3 Forward Strand Poly-A Tail 3' most 4 Forward Strand None 3' most 5 Forward Strand None Not 3' most 6 Forward Strand Internal Poly-A Not 3' most 11 Reverse Strand Poly-A Signal, Poly-A Tail 5' most 12 Reverse Strand Poly-A Signal 5' most 13 Reverse Strand Poly-A Tail 5' most 14 Reverse Strand None 5' most 15 Reverse Strand None Not 5' most 16 Reverse Strand Internal Poly-A Not 5' most 22 Unknown Poly-A Signal Last before signal 23 Unknown Poly-A Tail Last before tail 24 Unknown None Last in sequence 25 Unknown None Not last 26 Unknown Internal Poly-A Not 3' most 1000 Unknown- Derived from Genomic Sequence Not applicable Not applicable Keywords = MPSS, mRNA sequencing, tags |
| 9 |
GPL1432 |
6k-array, version 3/4. |
19,311 |
German Cancer Research Center (DKFZ) |
2004-09-02 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, 6k-array, version 3/4., Whole-genome BAC-array. Isolated BAC-DNA was amplified by two-step DOP-PCR. PCR products were dissolved in 3xSSC, 1.5M betaine and spotted as triplicates on epoxysilane-coated slides. Keywords = Matrix-CGH Keywords = array-CGH |
| 10 |
GPL1426 |
ABI Human Genome Survey Microarray Version 1 |
33,202 |
Applied Biosystem |
2004-08-31 |
Applied Biosystems |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, ABI Human Genome Survey Microarray Version 1, The Applied Biosystems Human Genome Survey Microarray--a component of the Applied Biosystems Gene Expression Array System--contains over 33,000 unique probes representing a complete, annotated, and fully curated set of approximately 27,850 human genes and approximately 53,000 transcripts from the public and Celera databases as of February, 2004. Applied Biosystems contact information: http://faqs.appliedbiosystems.com/cgi-bin/appliedbio.cfg/php/enduser/ask.php |
| 11 |
GPL1424 |
AECOM-H3-H11 |
9,568 |
Memorial Sloan Kettering Cancer Center |
2004-08-30 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, AECOM-H3-H11, cDNA array |
| 12 |
GPL1423 |
Meltzer Array UMB 2 |
8,192 |
University of Maryland School of Medicine |
2004-08-30 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, Meltzer Array UMB 2, DNA Array used in Stephen Meltzer's group at University of Maryland, Baltimore |
| 13 |
GPL1417 |
Barbry oligo 25000 nat |
27,648 |
CNRS |
2004-08-25 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, Barbry oligo 25000 nat, pangenomic oligonucleotide array |
| 14 |
GPL1414 |
Human_1_20K_Chip |
19,944 |
George Mason University |
2004-08-23 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, Human_1_20K_Chip, Human_1_20K_Chip was constructed from approximately 20,000 human cDNA clones purchased from Research Genetics (Huntsville, AL, USA). cDNA inserts were amplified directly from clones in culture using GF200F (5’-CTGCAAGGCGATTAAGTTGGGTAAC) and GF200R (5’-GTGAGCGGATAACAATTTCACACAGGAAACAGC). |
| 15 |
GPL1412 |
PBRC_GCF 18K HUM OLIGO |
21,120 |
Pennington Biomedical Research Center |
2004-08-21 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, PBRC_GCF 18K HUM OLIGO, Human Oligonucleotide (60 mer)probes designed by Compugen and manufactured by Sigma-Genosys were solublized in 45% DMSO and printed onto poly-L-lysine slides. The library contains 18,861 oligos representing 17,260 unique genes. Slides were printed using a Genomic Solutions (GeneMachine) OmniGrid equipped with Telechem SMP4 Stealth Micro Spotting pins. Keywords = Human 18K oligonucleotide |
| 16 |
GPL1411 |
UTSW Human 22k Oligo spotted array |
23,232 |
Oklahoma State University |
2004-08-17 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, UTSW Human 22k Oligo spotted array, Construction and Preparation of Human Oligo 22K Spotted Microarrays by UTSW: Operon Human Genome Oligo Set (Version 2) (70mers) representing 21,329 human genes in 150mM Sodium Phosphate (pH8.3) plus 1xSSC at 30 µM were spotted singly onto polymer-coated glass slides (Full Moon Biosystems) using BioRobotics MicroGrid II spotter (Genomic Solutions) fitted with 4x12 Microspot 2500 quill pins at 20-23°C and 60-65% RH. Spot are arranged with 22x22 spots per block (48 total blocks) and spot centers are 200 µm apart. Printed slides were subjected to a UV-cross-linking at a dose of 650mJ cm2 for probe immobilization. Slides with immobilized probes were then stored in slide holders and placed in a desiccator at room temperature. |
| 17 |
GPL1405 |
CCF Cancer cDNA Array |
9,984 |
Lerner Research Inst., The Cleveland Clinic |
2004-08-11 |
|
Homo sapiens
|
GeneChip |
spotted DNA/cDNA, CCF Cancer cDNA Array, The Cancer cDNA Array contains probes for 9241 cDNA clones corresponding to ~4900 unigenes or unclustered ESTs relevant to cancer biology. These include: 1) 1800 genes implicated in metastasis or tumor development in general from the literature and Affymetrix cancer G110 array (www.affymetrix.com/analysis/index.affx); 2) 1809 genes involved in kidney development (golgi.ana.ed.ac.uk/kidhome.html) or showing more than 3-fold variation of expression among 4 primary Wilms tumors and fetal kidney in our previous Affymetrix GeneChip experiments (unpublished data); 3) 1400 potential downstream targets of p53 transcriptional regulation; 4) 950 genes with AU-rich elements in their 3’ and/or 5’ UTR; 5) 1245 cytokine responsive genes, genes for zinc finger proteins or genes implicated in apoptosis. |
| 18 |
GPL1392 |
ABC Human 8K |
7,597 |
National Yang-Ming University |
2004-08-03 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, ABC Human 8K, It’s a commercial 7500 human cDNA microarray chip (ABC Human UniversoChip 8K; Asia BioInnovations Corporation, Taipei). |
| 19 |
GPL1390 |
Agilent Human 1A Oligo UNC custom Microarrays |
22,575 |
University of North Carolina at Chapel Hill |
2004-07-29 |
|
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent Human 1A Oligo UNC custom Microarrays, Represents about 22K 60-mer oligonucleotide probes which span conserved exons across the transcripts of the targeted full length genes (Incyte Foundation) in the home genome. About 17,000 probes are from Human 1A Oligo Microarray Kit. The other 4000 probes are specifically designed for Dr. Charles Perou Lab at University of North Carolina at Chapel Hill. |
| 20 |
GPL1384 |
DKFZ Operon 27k long oligonucleotide array |
27,648 |
German Cancer Research Center (DKFZ) |
2004-07-28 |
|
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, DKFZ Operon 27k long oligonucleotide array, Spotted long oligonucleotide array produced using the Operon Human Genome Oligo Set Version 2.1 (21,329 70mer oligonucleotides, based on build 147 of the Human UniGene database and the Human RefSeq Database, plus 24 controls) and the Operon Human Genome Oligo Set Version 2.1 Upgrade (5,462 70mer oligonucleotides, based on build 13.31 of the Human Ensembl Database). Spotting was performed in duplicates (replicate arrays) with 4x6 SMP3 pins (Telechem) at 18-20 °C and 40-50% RH on epoxysilane coated slides (Quantifoil) using 40 µM oligos in FBNC spotting buffer (G. Wrobel et al., Nucleic Acids Res 31 e67, 2003). Spot centers were 129 µm apart. DNA adhesion was accomplished by 1 h incubation at 60 °C followed by 240 mJ/cm2 UV irradiation at 254 nm. Keywords = spotted Keywords = human Keywords = long oligonucleotide Keywords = oligo Keywords = 70mer Keywords = Operon |
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