Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(32)
  Primates
(0)
  Rodents
(23)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(3)
  Plants
(46)
  Bacteria
(1)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(113)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(4)
  Tiling Array
(3)
  cDNA Array
(9)
  Oligo Array
(15)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(32)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL9077 SWEGENE_BAC_38K 41,760 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2009-08-21 SCIBLU - Swegene Centre for Integrative Biology at Lund University Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SWEGENE_BAC_38K,
2 GPL7768 KTH Human 30k v1.0 36,864 Royal Institute of Technology 2008-12-10 Royal Institute of Technology, Stockholm, Sweden Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, KTH Human 30k v1.0,
3 GPL7247 SWEGENE_BAC_33K_Full 36,288 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2008-09-04 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
Tiling Array spotted DNA/cDNA, SWEGENE_BAC_33K_Full, The 33k tiling BAC Array set contains 33,370 large-insert clones with complete genome coverage. The clone set consists of the 32k BAC clone library (GEO accession GPL4723) with additional clones located in the telomeric regions (Knight SJ et al., Am J Hum Genet 2000) and clones covering microdeletion syndromes (Vissers LE et al., Am J Hum Genet 2003).
4 GPL7203 LUH Human Genome CGH Microarray 244A 239,115 Dept of Clinical Genetics 2008-08-22 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, LUH Human Genome CGH Microarray 244A, This microarray is Agilent’s premium product for human DNA copy-number profiling. Over 236,000 60-mer oligonucleotide probes, specifically optimized for copy-number measurement, span coding and non-coding genomic sequences with median spacing of 7.4 kb and 16.5 kb respectively. This microarray is designed for use with Agilent’s optimized assay protocols, enabling researchers to use nanogram levels of total genomic DNA without complexity reduction.
5 GPL7191 Print_730 43,008 Karolinska Institute, Karolinska University Hospital, Solna 2008-08-21 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Print_730,
6 GPL7180 LUH Illumina human-6 v2.0 expression beadchip 46,713 Dept of Clinical Genetics 2008-08-18 Illumina Inc. Homo sapiens
Homo sapiens
Bead Array oligonucleotide beads, LUH Illumina human-6 v2.0 expression beadchip, Researchers can generate whole genome expression profiles for multiple samples on a single BeadChip. Researchers can profile six or eight samples perBeadChip, with more than 48,000 transcript probes per sample using the Human-6 v2 beadchip.
7 GPL6732 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF (REFSEQ_7) 26,714 Karolinska Institutet 2008-04-11 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF (REFSEQ_7), This identical to GPL570 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below. We used the REFSEQ7 version for HGU-133_plus2
8 GPL5886 SWEGENE H_v2.1.1_27k 30,000 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-09-18 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, SWEGENE H_v2.1.1_27k,
9 GPL5841 klingenkhh_BAC_3.7k_condensed_array 3,673 Dept of Clinical Genetics 2007-09-12 LUMC, dept of Molecular Cell Biology Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, klingenkhh_BAC_3.7k_condensed_array,
10 GPL5840 klingenkhh_BAC_32K_Full 31,958 Dept of Clinical Genetics 2007-09-12 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
Tiling Array spotted DNA/cDNA, klingenkhh_BAC_32K_Full, The 32k BAC Re-Array set Ver. 1.0 (32,433 BAC clones) was obtained from the BACPAC Resource Center at Children's Hospital Oakland Research Institute, Oakland (CA, US). The average resolution of the whole genome tiling clone set is 46kb. Clones were mapped to human genome build 17 (UCSC Human Genome Browser)
11 GPL5345 SWEGENE H_v2.1.1 55K 55,488 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-06-01 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, SWEGENE H_v2.1.1 55K,
12 GPL5186 SWEGENE H_v3.0.1 35K 36,288 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-05-21 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, SWEGENE H_v3.0.1 35K,
13 GPL5067 SHEU 41,472 Karolinska Institute, Karolinska University Hospital, Solna 2007-04-05 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHEU,
14 GPL5058 SHCU 43,008 Karolinska Institute, Karolinska University Hospital, Solna 2007-04-03 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SHCU,
15 GPL4862 SWEGENE human strand-specific cDNA array (cSense) 14,592 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-02-13 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SWEGENE human strand-specific cDNA array (cSense), Arrays contain strand specific cDNA probes. Probes are deposited as dsDNA and linked to the surface by NH2-modified ends. The deposited dsDNA is subsequently digested in situ in a strand-specific manner.
16 GPL4861 Swegene Human 27K RAP (positions from file) 27,498 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-02-28 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Swegene Human 27K RAP (positions from file),
17 GPL4723 SWEGENE_BAC_32K_Full 34,992 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2007-01-05 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
Tiling Array spotted DNA/cDNA, SWEGENE_BAC_32K_Full, The 32k BAC Re-Array set Ver. 1.0 (32,433 BAC clones) was obtained from the BACPAC Resource Center at Children's Hospital Oakland Research Institute, Oakland (CA, US). The average resolution of the whole genome tiling clone set is 46kb. Clones were mapped to human genome build 17 (UCSC Human Genome Browser)
18 GPL4454 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF 23,597 Karolinska Institutet 2006-10-16 Affymetrix Homo sapiens
Homo sapiens
GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array based on a custom CDF, This identical to GPL570 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below. We used the REFSEQ6 version for HGU-133_plus2
19 GPL3883 Swegene Human 27K RAP UniGene188 array 27,648 SCIBLU - Swegene Centre for Integrative Biology at Lund University 2006-06-19 Swegene DNA Microarray Resource Centre Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Swegene Human 27K RAP UniGene188 array,
20 GPL15462 Exiqon miRCURY LNA microRNA array v.10.0 Extended Version 2,452 Lund University, Sweden 2012-04-18 Exiqon Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Exiqon miRCURY LNA microRNA array v.10.0 Extended Version, Array represents miRBase version 10.0 with additional features.
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