Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(85)		   Primates
(0)		   Rodents
(42)		   Mammals
(3)		   Vertebrates
(25)		   Invertebrates
(20)		   Plants
(18)		   Bacteria
(41)		   Viruses
(4)		   Phages
(0)		   Unclassified
(12)		   All
(252)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(4)		   Tiling Array
(9)		   cDNA Array
(43)		   Oligo Array
(25)		   Bead Array
(1)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(0)		   Other
(0)		   All
(85)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL996 CR-UK DMF Human 6.5k genome-wide array 13,056 Cancer Research UK Cambridge Research Institute 2004-02-15 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, CR-UK DMF Human 6.5k genome-wide array, A cDNA microarray
2 GPL9740 FCCU_Human_Agilent_44k 40,638 Hutchison-MRC 2009-12-02 Agilent Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, FCCU_Human_Agilent_44k,
3 GPL9708 NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0 385,806 University of Cambridge 2009-11-20 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0, Genome build: hg18 NimbleGen description file: 2006-07-27_HG18_WG_CGH.ndf NimbleGen description file: 2006-07-27_HG18_WG_CGH.pos DESIGN_ID: 4366 DESIGN_NAME: 2006-07-27_HG18_WG_CGH Version: 1.0 Probe Length: 50-75mer Median Probe Spacing: 6270bp Catalog number: B4366-00-01 Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis.
4 GPL9704 [GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1 62,850 University of Cambridge 2009-11-20 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, [GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The SNP Array 5.0 is a single microarray featuring all single nucleotide polymorphisms (SNPs) from the original two-chip Mapping 500K Array Set, as well as 420,000 additional non-polymorphic probes that can measure other genetic differences, such as copy number variation. SNPs on the array are present on 200 to 1,100 base pair (bp) Nsp I or Sty I digested fragments in the human genome, and are amplified using the fifth generation of the Whole-genome Sampling Assay (WGSA). Contains SNPs on NC_000001.9 Annotations correspond to hg18 (NCBI 36.1)
5 GPL9677 PGT- 30K Human Array v1 31,236 The University of Nottingham 2009-11-16 Post-Genomic Technologies Facility, University of Nottingham Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, PGT- 30K Human Array v1, spotted oligonucleotides from MWG 30K sets A, B and C oligo sets
6 GPL9486 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENST, version 10] 27,004 Edinburgh University 2009-10-26 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [CDF: Hs133P_Hs_ENST, version 10], CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on Ensembl Transcript Ids (Ensembl build: 46) was used as source. For the CDF file: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. For detailed description please see the paper and website.
7 GPL9454 Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [HGU133Plus2_Hs_ENST (v10) CDF] 25,710 RVC 2009-10-15 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133 Plus 2.0 Array [HGU133Plus2_Hs_ENST (v10) CDF], This is identical to GPL570 but a custom CDF environment was used to extract data. The custom chip definition file (CDF) was based on Ensembl transcript annotation (Hs133P_Hs_ENST_version10.CDF) rather than Affymetrix annotation (Dai et al., PMID: 16284200). The CDF can be found at the link below.
8 GPL9336 MHP Human 1Mb_Chr18 CGH array 3,735 University of Cambridge 2009-10-01 Department of Pathology, Univeristy of Cambridge Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, MHP Human 1Mb_Chr18 CGH array, The 1Mb and Chromosome 18 clone set has been assembled by the Mapping Core, Map Finishing and Microarray Facility groups of the Wellcome Trust Sanger Institute, Hinxton, UK. Additional clones were also kindly supplied by the Wellcome Trust Sanger Institute. The array has 312 subarrays (13 rows by 24 columns), each subarray consists of 18 rows by 18 columns.
9 GPL931 RMRG array 2,112 Cambridge University 2004-01-15 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, RMRG array, Cambridge university RMRG nylon filter gene array
10 GPL9187 Human 40K A OciChip array 10,025 UNIVERSITY OF NOTTINGHAM 2009-09-14 Ocimum Biosolutions Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Human 40K A OciChip array,
11 GPL8876 Agilent custom 105K array (Agilent-019507) 105,072 Newcastle University 2009-07-17 Agilent Technologies Homo sapiens
Homo sapiens		 Oligo Array spotted oligonucleotide, Agilent custom 105K array (Agilent-019507), as per GPL4093 with additional oligonucleotides spanning pseudoautosomal region 1 on Xp/Yp
12 GPL8694 NimbleGen Homo sapiens 384K hg18 tiling set 16 383,527 King's College London 2009-06-10 NimbleGen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens 384K hg18 tiling set 16,
13 GPL8601 SMD Print_1163 Homo sapiens 38,784 University of London Tooting 2009-05-27 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, SMD Print_1163 Homo sapiens,
14 GPL8414 Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENSG] 11,896 Institute of Cancer Research 2009-04-07 Affymetrix Homo sapiens
Homo sapiens		 GeneChip in situ oligonucleotide, Affymetrix GeneChip Human Genome U133A 2.0 Array [CDF: Brainarray Version 10, Hs133Av2_Hs_ENSG], This is identical to GPL571 but a custom CDF environment was used to extract data (CDF: Brainarray Version 10, Hs133Av2_Hs_ENSG). The custom CDF is linked below as a supplementary file. See Dai et al., NAR 2005 33(20), PMID: 16284200.
15 GPL8233 Nimblegen 2006-08-02_GRI4489_HG18_ChIP array 386,419 University of Bristol 2009-02-26 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, Nimblegen 2006-08-02_GRI4489_HG18_ChIP array,
16 GPL8122 NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP) 94,383 Imperial College London 2009-01-27 Nimblegen Homo sapiens
Homo sapiens		 Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP),
17 GPL7347 Human 3K BAC/PAC array (Ensembl Ver49) 3,157 Cancer Research UK 2008-09-22 The Wellcome Trust Sanger Institute Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Human 3K BAC/PAC array (Ensembl Ver49), The Platform data table reflects a condensed representation of the array's replicate features. The full array layout representing all of the individual features is linked as a supplementary file at the foot of this record. This is exactly the same platform as Ensembl Ver39 array GPL6181. However, all BAC/PAC information has been updated based on Ensembl annotation (Ver49).
18 GPL7199 MHP Human 1Mb CGH array 3,040 University of Cambridge 2008-08-21 Department of Pathology, Univeristy of Cambridge Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, MHP Human 1Mb CGH array, The 1Mb clone set has been assembled by the Mapping Core, Map Finishing and Microarray Facility groups of the Wellcome Trust Sanger Institute, Hinxton, UK. Additional clones were also kindly supplied by the Wellcome Trust Sanger Institute. The array has 24 subarrays (6 rows by 4 columns), each subarray consists of 18 rows by 18 columns.
19 GPL6916 MRC Homo sapiens 6.06K 6,059 Medical Research Council Toxicology Unit 2008-06-02 Systems Toxicology Group. Medical Research Council Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, MRC Homo sapiens 6.06K,
20 GPL6915 MRC Homo sapiens 5.97K 5,971 Medical Research Council Toxicology Unit 2008-06-02 Systems Toxicology Group. Medical Research Council Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, MRC Homo sapiens 5.97K,
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