Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(85)
  Primates
(0)
  Rodents
(42)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(18)
  Bacteria
(41)
  Viruses
(0)
  Phages
(0)
  Unclassified
(0)
  All
(252)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(9)
  cDNA Array
(43)
  Oligo Array
(25)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(85)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10001 VUMC MACF Human 30K oligo (batch68.gal) 30,000 Hutchison-MRC 2010-02-02 VUMC Microarray Core Facility Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, VUMC MACF Human 30K oligo (batch68.gal),
2 GPL5737 Human 30K 60-mer oligo array 27,801 University College London 2007-08-13 VUMC Microarray Core Facility Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Human 30K 60-mer oligo array, hydrophilic polymer containing N-hydroxysuccinimide (NHS) ester reactive groups
3 GPL6853 Mermaid_Human_32K_CGH_v1.0 31,611 UCL EGA Institute for Women's Health 2008-05-12 UCL EGA Institute for Women's Health Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Mermaid_Human_32K_CGH_v1.0,
4 GPL5044 Human 10K-Wellcome Trust Sanger Institute 9,930 University of Oxford 2007-03-27 The Wellcome Trust Sanger Institute Microarray Facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 10K-Wellcome Trust Sanger Institute,
5 GPL6181 Human 3K BAC/PAC array (Ensembl Ver39) 3,157 Cancer Research UK 2007-11-23 The Wellcome Trust Sanger Institute Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 3K BAC/PAC array (Ensembl Ver39), The Platform data table reflects a condensed representation of the array's replicate features. The full array layout representing all of the individual features is linked as a supplementary file at the foot of this record. All BAC/PAC information has been updated based on Ensembl annotation (Ver49) on 22 Sep 2008. Please refer to GPL7347 for more details.
6 GPL7347 Human 3K BAC/PAC array (Ensembl Ver49) 3,157 Cancer Research UK 2008-09-22 The Wellcome Trust Sanger Institute Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 3K BAC/PAC array (Ensembl Ver49), The Platform data table reflects a condensed representation of the array's replicate features. The full array layout representing all of the individual features is linked as a supplementary file at the foot of this record. This is exactly the same platform as Ensembl Ver39 array GPL6181. However, all BAC/PAC information has been updated based on Ensembl annotation (Ver49).
7 GPL5055 MHP Human Chromosome 1 tile path CGH array version 1 2,137 University of Cambridge 2007-04-02 The Wellcome Trust Sanger Institute Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, MHP Human Chromosome 1 tile path CGH array version 1, The chromosome 1 tile path array clone set has been assembled by the Mapping Core, Map Finishing and Microarray Facility groups of the Wellcome Trust Sanger Institute, Hinxton, UK. The array has 24 subarrays (6 rows by 4 columns), each subarray consisted of 18 rows by 18 columns.
8 GPL3595 CRUK 6.5K Genome-wide array 5,639 University of Birmingham 2006-03-27 The Institute of Cancer Research Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, CRUK 6.5K Genome-wide array,
9 GPL6916 MRC Homo sapiens 6.06K 6,059 Medical Research Council Toxicology Unit 2008-06-02 Systems Toxicology Group. Medical Research Council Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, MRC Homo sapiens 6.06K,
10 GPL6915 MRC Homo sapiens 5.97K 5,971 Medical Research Council Toxicology Unit 2008-06-02 Systems Toxicology Group. Medical Research Council Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, MRC Homo sapiens 5.97K,
11 GPL4515 NICHE Human ENL and LNCaP v1.0 277 University of Ulster 2006-11-01 SuperArray Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, NICHE Human ENL and LNCaP v1.0, The Oligo GEArray® Human Prostate Cancer Biomarkers Microarray profiles the expression of 263 genes useful as molecular markers in the prognosis and diagnosis of prostate cancer.
12 GPL15242 SMD Print_1370 cpbl 49,152 Institute of Infection and Global Health, University of Liverpool 2012-02-15 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1370 cpbl,
13 GPL15240 SMD Print_1162 lc-51 38,784 Institute of Infection and Global Health, University of Liverpool 2012-02-15 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1162 lc-51,
14 GPL15241 SMD Print_1188 lc-54 38,784 Institute of Infection and Global Health, University of Liverpool 2012-02-15 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1188 lc-54,
15 GPL8601 SMD Print_1163 Homo sapiens 38,784 University of London Tooting 2009-05-27 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1163 Homo sapiens,
16 GPL4881 Placental 5K array 5,040 University of Aberdeen 2007-02-21 Rowett Research Institute Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Placental 5K array,
17 GPL9677 PGT- 30K Human Array v1 31,236 The University of Nottingham 2009-11-16 Post-Genomic Technologies Facility, University of Nottingham Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, PGT- 30K Human Array v1, spotted oligonucleotides from MWG 30K sets A, B and C oligo sets
18 GPL9187 Human 40K A OciChip array 10,025 UNIVERSITY OF NOTTINGHAM 2009-09-14 Ocimum Biosolutions Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 40K A OciChip array,
19 GPL2988 Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0 361,042 Sanger Institute 2005-10-19 NimbleGen Inc. WI, USA Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0, Custom fine-tiling array of 385k in situ isothermal oligonucleotide probes (Tm=76oC, 45mer - 85mer). Array allows fine detail aCGH of 131 contiguous chromosomal regions of suspected human copy number polymorphism.
20 GPL15904 Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions 385,775 University of Bristol 2012-08-08 Nimblegen (Roche) Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions, Format: 385K Build: HG18 Probe Length: 50-75mer Median Probe Spacing: 101bp Promoter Upstream Tiling: 800bp Promoter Downstream Tiling: 200bp Designid: 5179 Designname: 2007-01-30_HG18_5189_refseq Recommended Storage: Store arrays desiccated at room temperature. Tiled regions: WT1 region (chr11:31440000-33360000), H19 DMR (chr11:1975000-1982000), IGF2 DMR0 (chr11:2126000-2128000).
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