Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,761)		   Primates
(39)		   Rodents
(1,779)		   Mammals
(312)		   Vertebrates
(411)		   Invertebrates
(1,032)		   Plants
(2,239)		   Bacteria
(1,690)		   Viruses
(78)		   Phages
(8)		   Unclassified
(430)		   All
(11,831)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(323)		   Tiling Array
(706)		   cDNA Array
(1,052)		   Oligo Array
(1,352)		   Bead Array
(121)		   Protein Array
(1)		   Antibody
(21)		   RT-PCR
(89)		   HT-Seq
(51)		   Other
(36)		   All
(3,761)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10671 080814_HG18_Deluxe_Promoter_HX1 2,173,622 SRA International, Inc 2010-07-12 NimbleGen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 080814_HG18_Deluxe_Promoter_HX1, Platform annotations are based on build HG18, NCBI 36 native array description file: 080814_HG18_Deluxe_Promoter_HX1.ndf native array description file: 080814_HG18_Deluxe_Promoter_HX1.pos
2 GPL168 10k_print1 10,176 Stanford Microarray Database (SMD) 2002-05-22 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, 10k_print1, A microarray with 10176 spot features. Tip Configuration: Standard 4-tip Columns per Sector: 51 Rows per Sector: 50 Column Spacing: 200 Row Spacing: 200
3 GPL169 10k_print2 9,984 Stanford Microarray Database (SMD) 2002-05-22 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, 10k_print2, A microarray with 9984 spot features. Tip Configuration: Standard 4-tip Columns per Sector: 51 Rows per Sector: 49 Column Spacing: 200 Row Spacing: 200
4 GPL167 10k_Print3 9,984 Stanford Microarray Database (SMD) 2002-05-22 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, 10k_Print3, A microarray with 9984 spot features. Tip Configuration: Standard 4-tip Columns per Sector: 50 Rows per Sector: 50 Column Spacing: 137 Row Spacing: 137
5 GPL3282 11K_VJF-ARRAY 23,232 INSERM, UMR U-674, Université Paris Descartes 2005-12-23 Array s/IMAGE - Genexpress Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, 11K_VJF-ARRAY, Quality Control of the probes: Aliquots of each PCR product is analyzed for quality by UV measurement and agarose gel electrophoresis (< 2%) with ethidium bromide staining. Sample amplification is considered to have failed when multiple bands, unexpected product size or low integrity is observed. A low A260:A280 ratio is indicative of a low purity of the PCR product and may be associated with alcohol, detergent and protein contaminations, resulting in a high absorbance at 235 nm and 320 nm. These products were flagged out and specifically re-amplified. A re-sequencing step was randomly performed for 689 clones distributed across the plates, in order to identify any manipulation errors and to allow refinement of the annotations. Representative PCR products were quantified using PicoGreen dyes (Molecular Probes, USA) in a fluorescent assay measuring double-strand DNA concentration according to the manufacturer’s instruction. Samples with quantity under 4 pmol, a threshold for our microarrays, are considered to have failed, were flagged out and then re-amplified. Microarray printing design: The 11K_VJF-array contains 8388 clones from the Mammalian Gene collection (MGC, IMAGE Consortium). This collection, namely IRAL, seeks to identify and sequence a representative full open reading frame clone for each human gene. A complementary cDNA IMAGE clone collection containing 1126 more clones were selected to represent a cancer targeted-set. Both Amersham Biosciences Lucidea™ Universal Scorecard™ and Lucidea™ Microarray ScoreCard v1.1, control clones are also present on this array. Thus, the 11K_VJF-array consists in a 23,040 spots array (n = 2), including 9,514 spots of cDNA clones (83 %), from which 9,160 non redundant clones, then 432 technical control fragments (4 %) and 1,574 blank spots (13 %). Arrays printed on this device contain four meta-columns and twelve meta-rows, thus there are 48 grids in total, each grid containing 22 rows and 22 columns. Duplicate spots are placed in the same relative position in two separate meta-columns i.e. meta-column 2 is a replicate of meta-column 1 and meta-column 4 is a replicate of meta-column 3. Overall array dimensions are 53 mm length and 18 mm width. Spot size of each element is around 170 µm in diameter and spot centers are 185 µm apart.
6 GPL2008 13k cDNA chip NCCS 13,495 National Cancer Centre of Singapore 2005-04-30 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, 13k cDNA chip NCCS, 13k element cDNA chip printed at National Cancer Centre of Singapore in 2001
7 GPL2009 18k cDNA chip NCCS 17,527 National Cancer Centre of Singapore 2005-04-30 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, 18k cDNA chip NCCS, cDNA chip printed at National Cancer Centre of Singapore in 2001
8 GPL4016 2005-04-04_Human_Promo_ChIP 391,015 National Cancer Institute 2006-07-19 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-04-04_Human_Promo_ChIP,
9 GPL5533 2005-09-28_Crawford_HG17_Set01 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set01,
10 GPL5534 2005-09-28_Crawford_HG17_Set02 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set02,
11 GPL5535 2005-09-28_Crawford_HG17_Set03 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set03,
12 GPL5536 2005-09-28_Crawford_HG17_Set04 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set04,
13 GPL5537 2005-09-28_Crawford_HG17_Set05 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set05,
14 GPL5538 2005-09-28_Crawford_HG17_Set06 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set06,
15 GPL5539 2005-09-28_Crawford_HG17_Set07 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set07,
16 GPL5540 2005-09-28_Crawford_HG17_Set08 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set08,
17 GPL5541 2005-09-28_Crawford_HG17_Set09 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set09,
18 GPL5542 2005-09-28_Crawford_HG17_Set10 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set10,
19 GPL5543 2005-09-28_Crawford_HG17_Set11 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set11,
20 GPL5544 2005-09-28_Crawford_HG17_Set12 391,015 National Cancer Institute 2007-07-13 Nimblegen Homo sapiens
Homo sapiens		 Oligo Array in situ oligonucleotide, 2005-09-28_Crawford_HG17_Set12,
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