| 1 |
GPL16498 |
Nimblegen_Human_720K_Chr11extra |
718,882 |
The University of Edinburgh |
2013-01-11 |
NimbleGen |
Homo sapiens
 |
Tiling Array |
in situ oligonucleotide, Nimblegen_Human_720K_Chr11extra, HG19 NCBI37 Tiling probes across Chr11 and parts of Chr17 and Chr22 120625_HG19_chr11extra_NG_CGH.ndf 120625_HG19_chr11extra_NG_CGH.pos |
| 2 |
GPL10461 |
NimbleGen_Homo Sapiens_720k_080530_HG18_WG_CGH_v2_HX3 |
714,000 |
Cardiff University |
2010-05-26 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen_Homo Sapiens_720k_080530_HG18_WG_CGH_v2_HX3, hg18 native array description file: 080530_HG18_WG_CGH_v2_HX3.ndf native array description file: 080530_HG18_WG_CGH_v2_HX3.pos native array description file: 080530_HG18_WG_CGH_v2_HX3_probe_locations.gff |
| 3 |
GPL14361 |
NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array |
711,794 |
Queen Mary University of London |
2011-08-30 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array, Build: HG18, NCBI 36 |
| 4 |
GPL3472 |
Sanger/Nimblegen Human array painting array_Case 1 |
388,102 |
Wellcome Trust Sanger Institute |
2006-02-20 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Case 1, |
| 5 |
GPL10113 |
NimbleGen/UCL human 388K tiling array |
387,835 |
UCL Cancer Institute |
2010-02-26 |
NimbleGen |
Homo sapiens
|
Tiling Array |
spotted oligonucleotide, NimbleGen/UCL human 388K tiling array, Annotation from NCBI human build 36. Tiling of various regions on NCBI human build 36 (hg18), including selected regions designated as controls by the customer. Probes (control and experimental) selected from hg18_tiling at int50win25. Mean probe spacing at 74bps for both sets. |
| 6 |
GPL8233 |
Nimblegen 2006-08-02_GRI4489_HG18_ChIP array |
386,419 |
University of Bristol |
2009-02-26 |
Nimblegen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Nimblegen 2006-08-02_GRI4489_HG18_ChIP array, |
| 7 |
GPL9708 |
NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0 |
385,806 |
University of Cambridge |
2009-11-20 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0, Genome build: hg18 NimbleGen description file: 2006-07-27_HG18_WG_CGH.ndf NimbleGen description file: 2006-07-27_HG18_WG_CGH.pos DESIGN_ID: 4366 DESIGN_NAME: 2006-07-27_HG18_WG_CGH Version: 1.0 Probe Length: 50-75mer Median Probe Spacing: 6270bp Catalog number: B4366-00-01 Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis. |
| 8 |
GPL15904 |
Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions |
385,775 |
University of Bristol |
2012-08-08 |
Nimblegen (Roche) |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions, Format: 385K Build: HG18 Probe Length: 50-75mer Median Probe Spacing: 101bp Promoter Upstream Tiling: 800bp Promoter Downstream Tiling: 200bp Designid: 5179 Designname: 2007-01-30_HG18_5189_refseq Recommended Storage: Store arrays desiccated at room temperature. Tiled regions: WT1 region (chr11:31440000-33360000), H19 DMR (chr11:1975000-1982000), IGF2 DMR0 (chr11:2126000-2128000). |
| 9 |
GPL3481 |
Sanger/Nimblegen Human array painting array_Cases 2-4 |
383,589 |
Wellcome Trust Sanger Institute |
2006-02-23 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Cases 2-4, |
| 10 |
GPL8694 |
NimbleGen Homo sapiens 384K hg18 tiling set 16 |
383,527 |
King's College London |
2009-06-10 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, NimbleGen Homo sapiens 384K hg18 tiling set 16, |
| 11 |
GPL11256 |
NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18) |
375,728 |
Wellcome Trust Sanger Institute |
2010-11-30 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18), Annotation in this record is based on NCBI human build 36 (hg18) We profiled chromatin structure at 62 non-redundant genetic loci representing all known associations (as of November 2009, CEU population) with 11 cardiovascular traits: coronary artery disease (CAD), (early-onset) myocardial infarction (MI), mean platelet volume (MPV), platelet counts (PLT), platelet signaling (PLS), white blood cell counts (WBC), red blood cell counts (RBC), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), systolic blood pressure (SBP), diastolic blood pressure (DBP), hypertension (HYP). We considered only genetic loci that reached genome-wide significance with the threshold of P<5x10-8 in a genome-wide association (GWA) study conducted with individuals of European ancestry. In addition, we selected genetic loci based on biological evidence, where there was suggestive evidence of association. For each locus, we included the entire recombination interval of the index SNP. If a recombination interval exceeded 500 kb, we included the closest target gene ±10 kb. In order to assess patterns of cell type specificity, we included eight lineage-specific reference genes (±2 kb) for each of megakaryocytes, erythroblasts and monocytes on the array. |
| 12 |
GPL2988 |
Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0 |
361,042 |
Sanger Institute |
2005-10-19 |
NimbleGen Inc. WI, USA |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0, Custom fine-tiling array of 385k in situ isothermal oligonucleotide probes (Tm=76oC, 45mer - 85mer). Array allows fine detail aCGH of 131 contiguous chromosomal regions of suspected human copy number polymorphism. |
| 13 |
GPL15237 |
Agilent-021438 Custom HD-CGH microarray (1x244K) |
241,797 |
Barts & The London School of Medicine & Dentistry |
2012-02-15 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-021438 Custom HD-CGH microarray (1x244K), Agilent Custom Human 244K CGH Microarray consisting of 60-mer oligonucleotides mapped to UCSC hg18 human genome (NCBI build 36) |
| 14 |
GPL11340 |
Agilent-014068 Homo sapiens 185K microarray |
183,328 |
Newcastle University |
2010-12-20 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-014068 Homo sapiens 185K microarray, |
| 15 |
GPL16494 |
Agilent-028516 Custom human mapping supercoiling array (CN1) |
173,214 |
The University of Edinburgh |
2013-01-11 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-028516 Custom human mapping supercoiling array (CN1), Mapping supercoiling |
| 16 |
GPL8876 |
Agilent custom 105K array (Agilent-019507) |
105,072 |
Newcastle University |
2009-07-17 |
Agilent Technologies |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, Agilent custom 105K array (Agilent-019507), as per GPL4093 with additional oligonucleotides spanning pseudoautosomal region 1 on Xp/Yp |
| 17 |
GPL8122 |
NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP) |
94,383 |
Imperial College London |
2009-01-27 |
Nimblegen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP), |
| 18 |
GPL14788 |
Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array |
71,566 |
Univeristy of Edinburgh |
2011-10-25 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array, Human genome build hg17 Tiles all biologically significant ENCODE regions 2007-04-30_HG17_encode_4plex.ndf 2007-04-30_HG17_encode_4plex.pos |
| 19 |
GPL9704 |
[GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1 |
62,850 |
University of Cambridge |
2009-11-20 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The SNP Array 5.0 is a single microarray featuring all single nucleotide polymorphisms (SNPs) from the original two-chip Mapping 500K Array Set, as well as 420,000 additional non-polymorphic probes that can measure other genetic differences, such as copy number variation. SNPs on the array are present on 200 to 1,100 base pair (bp) Nsp I or Sty I digested fragments in the human genome, and are amplified using the fifth generation of the Whole-genome Sampling Assay (WGSA). Contains SNPs on NC_000001.9 Annotations correspond to hg18 (NCBI 36.1) |
| 20 |
GPL10383 |
Agilent MQD Human 60K v1.0 |
59,090 |
University of Cambridge |
2010-05-04 |
Agilent |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent MQD Human 60K v1.0, Agilent-026031 NCBI human genome Build 36 (UCSC hg18). |