Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(91)
  Primates
(0)
  Rodents
(49)
  Mammals
(4)
  Vertebrates
(29)
  Invertebrates
(26)
  Plants
(22)
  Bacteria
(49)
  Viruses
(4)
  Phages
(0)
  Unclassified
(13)
  All
(289)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(3)
  Tiling Array
(9)
  cDNA Array
(45)
  Oligo Array
(28)
  Bead Array
(1)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(4)
  HT-Seq
(0)
  Other
(0)
  All
(91)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL16498 Nimblegen_Human_720K_Chr11extra 718,882 The University of Edinburgh 2013-01-11 NimbleGen Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Nimblegen_Human_720K_Chr11extra, HG19 NCBI37 Tiling probes across Chr11 and parts of Chr17 and Chr22 120625_HG19_chr11extra_NG_CGH.ndf 120625_HG19_chr11extra_NG_CGH.pos
2 GPL10461 NimbleGen_Homo Sapiens_720k_080530_HG18_WG_CGH_v2_HX3 714,000 Cardiff University 2010-05-26 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen_Homo Sapiens_720k_080530_HG18_WG_CGH_v2_HX3, hg18 native array description file: 080530_HG18_WG_CGH_v2_HX3.ndf native array description file: 080530_HG18_WG_CGH_v2_HX3.pos native array description file: 080530_HG18_WG_CGH_v2_HX3_probe_locations.gff
3 GPL14361 NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array 711,794 Queen Mary University of London 2011-08-30 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array, Build: HG18, NCBI 36
4 GPL3472 Sanger/Nimblegen Human array painting array_Case 1 388,102 Wellcome Trust Sanger Institute 2006-02-20 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Case 1,
5 GPL10113 NimbleGen/UCL human 388K tiling array 387,835 UCL Cancer Institute 2010-02-26 NimbleGen Homo sapiens
Homo sapiens
Tiling Array spotted oligonucleotide, NimbleGen/UCL human 388K tiling array, Annotation from NCBI human build 36. Tiling of various regions on NCBI human build 36 (hg18), including selected regions designated as controls by the customer. Probes (control and experimental) selected from hg18_tiling at int50win25. Mean probe spacing at 74bps for both sets.
6 GPL8233 Nimblegen 2006-08-02_GRI4489_HG18_ChIP array 386,419 University of Bristol 2009-02-26 Nimblegen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Nimblegen 2006-08-02_GRI4489_HG18_ChIP array,
7 GPL9708 NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0 385,806 University of Cambridge 2009-11-20 NimbleGen Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0, Genome build: hg18 NimbleGen description file: 2006-07-27_HG18_WG_CGH.ndf NimbleGen description file: 2006-07-27_HG18_WG_CGH.pos DESIGN_ID: 4366 DESIGN_NAME: 2006-07-27_HG18_WG_CGH Version: 1.0 Probe Length: 50-75mer Median Probe Spacing: 6270bp Catalog number: B4366-00-01 Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis.
8 GPL15904 Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions 385,775 University of Bristol 2012-08-08 Nimblegen (Roche) Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Nimblegen Human DNA Methylation 385K Promoter plus 11p13, 11p15 tiled regions, Format: 385K Build: HG18 Probe Length: 50-75mer Median Probe Spacing: 101bp Promoter Upstream Tiling: 800bp Promoter Downstream Tiling: 200bp Designid: 5179 Designname: 2007-01-30_HG18_5189_refseq Recommended Storage: Store arrays desiccated at room temperature. Tiled regions: WT1 region (chr11:31440000-33360000), H19 DMR (chr11:1975000-1982000), IGF2 DMR0 (chr11:2126000-2128000).
9 GPL3481 Sanger/Nimblegen Human array painting array_Cases 2-4 383,589 Wellcome Trust Sanger Institute 2006-02-23 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Cases 2-4,
10 GPL8694 NimbleGen Homo sapiens 384K hg18 tiling set 16 383,527 King's College London 2009-06-10 NimbleGen Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens 384K hg18 tiling set 16,
11 GPL11256 NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18) 375,728 Wellcome Trust Sanger Institute 2010-11-30 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18), Annotation in this record is based on NCBI human build 36 (hg18) We profiled chromatin structure at 62 non-redundant genetic loci representing all known associations (as of November 2009, CEU population) with 11 cardiovascular traits: coronary artery disease (CAD), (early-onset) myocardial infarction (MI), mean platelet volume (MPV), platelet counts (PLT), platelet signaling (PLS), white blood cell counts (WBC), red blood cell counts (RBC), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), systolic blood pressure (SBP), diastolic blood pressure (DBP), hypertension (HYP). We considered only genetic loci that reached genome-wide significance with the threshold of P<5x10-8 in a genome-wide association (GWA) study conducted with individuals of European ancestry. In addition, we selected genetic loci based on biological evidence, where there was suggestive evidence of association. For each locus, we included the entire recombination interval of the index SNP. If a recombination interval exceeded 500 kb, we included the closest target gene ±10 kb. In order to assess patterns of cell type specificity, we included eight lineage-specific reference genes (±2 kb) for each of megakaryocytes, erythroblasts and monocytes on the array.
12 GPL2988 Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0 361,042 Sanger Institute 2005-10-19 NimbleGen Inc. WI, USA Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Sanger (Hurles) - Homo sapiens - 385K feature custom tiling path array - v1.0, Custom fine-tiling array of 385k in situ isothermal oligonucleotide probes (Tm=76oC, 45mer - 85mer). Array allows fine detail aCGH of 131 contiguous chromosomal regions of suspected human copy number polymorphism.
13 GPL15237 Agilent-021438 Custom HD-CGH microarray (1x244K) 241,797 Barts & The London School of Medicine & Dentistry 2012-02-15 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-021438 Custom HD-CGH microarray (1x244K), Agilent Custom Human 244K CGH Microarray consisting of 60-mer oligonucleotides mapped to UCSC hg18 human genome (NCBI build 36)
14 GPL15724 Agilent-021783 custom human 244K microarray 234,758 Cambridge Systems Biology Centre 2012-06-21 Agilent Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-021783 custom human 244K microarray, in situ synthesis process prints 60-mer length oligonucleotide probes, base-by-base, from digital sequence files. annotation in the GEO formatted Agilent file is hg19 while this analysis and Platform record used hg18.
15 GPL11340 Agilent-014068 Homo sapiens 185K microarray 183,328 Newcastle University 2010-12-20 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-014068 Homo sapiens 185K microarray,
16 GPL16494 Agilent-028516 Custom human mapping supercoiling array (CN1) 173,214 The University of Edinburgh 2013-01-11 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-028516 Custom human mapping supercoiling array (CN1), Mapping supercoiling
17 GPL8876 Agilent custom 105K array (Agilent-019507) 105,072 Newcastle University 2009-07-17 Agilent Technologies Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Agilent custom 105K array (Agilent-019507), as per GPL4093 with additional oligonucleotides spanning pseudoautosomal region 1 on Xp/Yp
18 GPL8122 NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP) 94,383 Imperial College London 2009-01-27 Nimblegen Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, NimbleGen Homo sapiens custom tiling (2006-07-20_Flanagan_HG17_ChIP),
19 GPL18348 Agilent-021441 NCode Human Long Non-coding RNA microarray (Feature Number Version) 79,697 The University of Sheffield 2014-02-27 Invitrogen Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Agilent-021441 NCode Human Long Non-coding RNA microarray (Feature Number Version), Based on hg18; NCBI36; Mar2006 NCode_Human_ncRNA_v1_021441_ncRNA_v1_human
20 GPL14788 Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array 71,566 Univeristy of Edinburgh 2011-10-25 NimbleGen Homo sapiens
Homo sapiens
Tiling Array in situ oligonucleotide, Human DNA Methylation 4x72K ENCODE HG17 Targeted Tiling Array, Human genome build hg17 Tiles all biologically significant ENCODE regions 2007-04-30_HG17_encode_4plex.ndf 2007-04-30_HG17_encode_4plex.pos
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