Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(91)
  Primates
(0)
  Rodents
(49)
  Mammals
(0)
  Vertebrates
(0)
  Invertebrates
(0)
  Plants
(22)
  Bacteria
(49)
  Viruses
(4)
  Phages
(0)
  Unclassified
(0)
  All
(289)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(9)
  cDNA Array
(45)
  Oligo Array
(28)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(0)
  Other
(0)
  All
(91)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10452 Agilent-022820 Homo sapiens 44K TET2 and 7q 31,836 Wessex Regional Genetics Laboratory 2010-05-21 Agilent Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, Agilent-022820 Homo sapiens 44K TET2 and 7q,
2 GPL3472 Sanger/Nimblegen Human array painting array_Case 1 388,102 Wellcome Trust Sanger Institute 2006-02-20 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Case 1,
3 GPL3481 Sanger/Nimblegen Human array painting array_Cases 2-4 383,589 Wellcome Trust Sanger Institute 2006-02-23 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Cases 2-4,
4 GPL11256 NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18) 375,728 Wellcome Trust Sanger Institute 2010-11-30 NimbleGen Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18), Annotation in this record is based on NCBI human build 36 (hg18) We profiled chromatin structure at 62 non-redundant genetic loci representing all known associations (as of November 2009, CEU population) with 11 cardiovascular traits: coronary artery disease (CAD), (early-onset) myocardial infarction (MI), mean platelet volume (MPV), platelet counts (PLT), platelet signaling (PLS), white blood cell counts (WBC), red blood cell counts (RBC), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), systolic blood pressure (SBP), diastolic blood pressure (DBP), hypertension (HYP). We considered only genetic loci that reached genome-wide significance with the threshold of P<5x10-8 in a genome-wide association (GWA) study conducted with individuals of European ancestry. In addition, we selected genetic loci based on biological evidence, where there was suggestive evidence of association. For each locus, we included the entire recombination interval of the index SNP. If a recombination interval exceeded 500 kb, we included the closest target gene ±10 kb. In order to assess patterns of cell type specificity, we included eight lineage-specific reference genes (±2 kb) for each of megakaryocytes, erythroblasts and monocytes on the array.
5 GPL16296 HiggsGibbons Human 1K HG18 v1.0 1,046 Weatherall Institute of Molecular Medicine 2012-11-19 Dunham Laboratory, Sanger Centre, UK Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, HiggsGibbons Human 1K HG18 v1.0,
6 GPL10485 Dunham lab Human 16p Array H300A 707 Weatherall Institute of Molecular Medicine 2010-06-04 Dunham Laboratory, Sanger Centre, UK Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Dunham lab Human 16p Array H300A,
7 GPL17294 Estrogen Receptor Signaling PCR Array PAHS-005 96 warwick medical school 2013-06-14 SABiosciences Homo sapiens
Homo sapiens
RT-PCR RT-PCR, Estrogen Receptor Signaling PCR Array PAHS-005, PCR assay
8 GPL15482 Applied Biosystems/University of Birmingham Human RT-PCR array 96 University oif Birmingham 2012-04-23 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, Applied Biosystems/University of Birmingham Human RT-PCR array, PCR assay. 96-well custom gene expression array. Catalog number of plate: 4391524
9 GPL4515 NICHE Human ENL and LNCaP v1.0 277 University of Ulster 2006-11-01 SuperArray Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, NICHE Human ENL and LNCaP v1.0, The Oligo GEArray® Human Prostate Cancer Biomarkers Microarray profiles the expression of 263 genes useful as molecular markers in the prognosis and diagnosis of prostate cancer.
10 GPL15331 Agilent-026817 University_Surrey_HumanSleep_44k_v1 45,220 University of Surrey 2012-03-08 Agilent Homo sapiens
Homo sapiens
Oligo Array in situ oligonucleotide, Agilent-026817 University_Surrey_HumanSleep_44k_v1,
11 GPL334 Human 10K - Wellcome Trust Sanger Institute 9,984 University of Oxford, John Radcliffe Hospital 2003-06-06 Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 10K - Wellcome Trust Sanger Institute, 10K cDNA microarray manufactured at the Microarray Facility, The Wellcome Trust Sanger Institute, Cambridge, UK.
12 GPL5678 MPSS tags from techical comparison of SAGE and MPSS 30,099 University of Oxford 2007-07-27 Homo sapiens
Homo sapiens
MPSS MPSS, MPSS tags from techical comparison of SAGE and MPSS, A list of all tags obtained in a set of MPSS libraries used to analyse the transcriptome of a CD4+ T cell clone.
13 GPL5044 Human 10K-Wellcome Trust Sanger Institute 9,930 University of Oxford 2007-03-27 The Wellcome Trust Sanger Institute Microarray Facility Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 10K-Wellcome Trust Sanger Institute,
14 GPL9187 Human 40K A OciChip array 10,025 UNIVERSITY OF NOTTINGHAM 2009-09-14 Ocimum Biosolutions Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, Human 40K A OciChip array,
15 GPL8601 SMD Print_1163 Homo sapiens 38,784 University of London Tooting 2009-05-27 Stanford Functional Genomics Facility, Stanford School of Medicine Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, SMD Print_1163 Homo sapiens,
16 GPL2914 MRC Human Known Gene Oligo Array 21,120 University of Leicester 2005-10-04 MRC HGMP Resource Centre Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, MRC Human Known Gene Oligo Array,
17 GPL3218 MRC Human Known Gene Oligo Array Print B 21,120 University of Leicester 2005-12-01 MRC HGMP Resource Centre Homo sapiens
Homo sapiens
Oligo Array spotted oligonucleotide, MRC Human Known Gene Oligo Array Print B,
18 GPL4752 MRC Homo sapiens 6K 6,050 University of Leicester 2007-01-16 MRC Toxicology Unit Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, MRC Homo sapiens 6K,
19 GPL4779 MRC Homo sapiens 6K Hs030602 5,680 University of Leicester 2007-01-24 MRC Toxicology Unit Homo sapiens
Homo sapiens
cDNA Array spotted DNA/cDNA, MRC Homo sapiens 6K Hs030602,
20 GPL11050 Applied Biosystems Human MicroRNA Array (A) plates 378 University of Leicester 2010-10-14 Applied Biosystems Homo sapiens
Homo sapiens
RT-PCR RT-PCR, Applied Biosystems Human MicroRNA Array (A) plates, Human MicroRNA Array (A) plates (containing assays for 377 miRNA) were used (Applied Biosystems, #4398965).
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