| 1 |
GPL10452 |
Agilent-022820 Homo sapiens 44K TET2 and 7q |
31,836 |
Wessex Regional Genetics Laboratory |
2010-05-21 |
Agilent |
Homo sapiens
 |
Oligo Array |
spotted oligonucleotide, Agilent-022820 Homo sapiens 44K TET2 and 7q, |
| 2 |
GPL3472 |
Sanger/Nimblegen Human array painting array_Case 1 |
388,102 |
Wellcome Trust Sanger Institute |
2006-02-20 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Case 1, |
| 3 |
GPL3481 |
Sanger/Nimblegen Human array painting array_Cases 2-4 |
383,589 |
Wellcome Trust Sanger Institute |
2006-02-23 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Sanger/Nimblegen Human array painting array_Cases 2-4, |
| 4 |
GPL11256 |
NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18) |
375,728 |
Wellcome Trust Sanger Institute |
2010-11-30 |
NimbleGen |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, NimbleGen custom human 385K ChIP-chip array (DP_FAIRE_HG18), Annotation in this record is based on NCBI human build 36 (hg18) We profiled chromatin structure at 62 non-redundant genetic loci representing all known associations (as of November 2009, CEU population) with 11 cardiovascular traits: coronary artery disease (CAD), (early-onset) myocardial infarction (MI), mean platelet volume (MPV), platelet counts (PLT), platelet signaling (PLS), white blood cell counts (WBC), red blood cell counts (RBC), mean corpuscular volume (MCV), mean corpuscular hemoglobin (MCH), systolic blood pressure (SBP), diastolic blood pressure (DBP), hypertension (HYP). We considered only genetic loci that reached genome-wide significance with the threshold of P<5x10-8 in a genome-wide association (GWA) study conducted with individuals of European ancestry. In addition, we selected genetic loci based on biological evidence, where there was suggestive evidence of association. For each locus, we included the entire recombination interval of the index SNP. If a recombination interval exceeded 500 kb, we included the closest target gene ±10 kb. In order to assess patterns of cell type specificity, we included eight lineage-specific reference genes (±2 kb) for each of megakaryocytes, erythroblasts and monocytes on the array. |
| 5 |
GPL10485 |
Dunham lab Human 16p Array H300A |
707 |
Weatherall Institute of Molecular Medicine |
2010-06-04 |
Dunham Laboratory, Sanger Centre, UK |
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, Dunham lab Human 16p Array H300A, |
| 6 |
GPL15482 |
Applied Biosystems/University of Birmingham Human RT-PCR array |
96 |
University oif Birmingham |
2012-04-23 |
Applied Biosystems |
Homo sapiens
|
RT-PCR |
RT-PCR, Applied Biosystems/University of Birmingham Human RT-PCR array, PCR assay. 96-well custom gene expression array. Catalog number of plate: 4391524 |
| 7 |
GPL4515 |
NICHE Human ENL and LNCaP v1.0 |
277 |
University of Ulster |
2006-11-01 |
SuperArray |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, NICHE Human ENL and LNCaP v1.0, The Oligo GEArray® Human Prostate Cancer Biomarkers Microarray profiles the expression of 263 genes useful as molecular markers in the prognosis and diagnosis of prostate cancer. |
| 8 |
GPL15331 |
Agilent-026817 University_Surrey_HumanSleep_44k_v1 |
45,220 |
University of Surrey |
2012-03-08 |
Agilent |
Homo sapiens
|
Oligo Array |
in situ oligonucleotide, Agilent-026817 University_Surrey_HumanSleep_44k_v1, |
| 9 |
GPL334 |
Human 10K - Wellcome Trust Sanger Institute |
9,984 |
University of Oxford, John Radcliffe Hospital |
2003-06-06 |
|
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, Human 10K - Wellcome Trust Sanger Institute, 10K cDNA microarray manufactured at the Microarray Facility, The Wellcome Trust Sanger Institute, Cambridge, UK. |
| 10 |
GPL5678 |
MPSS tags from techical comparison of SAGE and MPSS |
30,099 |
University of Oxford |
2007-07-27 |
|
Homo sapiens
|
MPSS |
MPSS, MPSS tags from techical comparison of SAGE and MPSS, A list of all tags obtained in a set of MPSS libraries used to analyse the transcriptome of a CD4+ T cell clone. |
| 11 |
GPL5044 |
Human 10K-Wellcome Trust Sanger Institute |
9,930 |
University of Oxford |
2007-03-27 |
The Wellcome Trust Sanger Institute Microarray Facility |
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, Human 10K-Wellcome Trust Sanger Institute, |
| 12 |
GPL9187 |
Human 40K A OciChip array |
10,025 |
UNIVERSITY OF NOTTINGHAM |
2009-09-14 |
Ocimum Biosolutions |
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, Human 40K A OciChip array, |
| 13 |
GPL8601 |
SMD Print_1163 Homo sapiens |
38,784 |
University of London Tooting |
2009-05-27 |
Stanford Functional Genomics Facility, Stanford School of Medicine |
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, SMD Print_1163 Homo sapiens, |
| 14 |
GPL2914 |
MRC Human Known Gene Oligo Array |
21,120 |
University of Leicester |
2005-10-04 |
MRC HGMP Resource Centre |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, MRC Human Known Gene Oligo Array, |
| 15 |
GPL3218 |
MRC Human Known Gene Oligo Array Print B |
21,120 |
University of Leicester |
2005-12-01 |
MRC HGMP Resource Centre |
Homo sapiens
|
Oligo Array |
spotted oligonucleotide, MRC Human Known Gene Oligo Array Print B, |
| 16 |
GPL4752 |
MRC Homo sapiens 6K |
6,050 |
University of Leicester |
2007-01-16 |
MRC Toxicology Unit |
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, MRC Homo sapiens 6K, |
| 17 |
GPL4779 |
MRC Homo sapiens 6K Hs030602 |
5,680 |
University of Leicester |
2007-01-24 |
MRC Toxicology Unit |
Homo sapiens
|
cDNA Array |
spotted DNA/cDNA, MRC Homo sapiens 6K Hs030602, |
| 18 |
GPL11050 |
Applied Biosystems Human MicroRNA Array (A) plates |
378 |
University of Leicester |
2010-10-14 |
Applied Biosystems |
Homo sapiens
|
RT-PCR |
RT-PCR, Applied Biosystems Human MicroRNA Array (A) plates, Human MicroRNA Array (A) plates (containing assays for 377 miRNA) were used (Applied Biosystems, #4398965). |
| 19 |
GPL9708 |
NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0 |
385,806 |
University of Cambridge |
2009-11-20 |
NimbleGen |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, NimbleGen Human CGH 385K Whole-Genome Tiling Array v1.0, Genome build: hg18 NimbleGen description file: 2006-07-27_HG18_WG_CGH.ndf NimbleGen description file: 2006-07-27_HG18_WG_CGH.pos DESIGN_ID: 4366 DESIGN_NAME: 2006-07-27_HG18_WG_CGH Version: 1.0 Probe Length: 50-75mer Median Probe Spacing: 6270bp Catalog number: B4366-00-01 Single array CGH design for whole human genome (hg18; NCBI Build 36). Probes selected from hg18_tiling database using 6000 bp interval and 250 bp window. Isothermal probes with min length of 50 bp and max length of 75 bp and target Tm of 76C. Cycle restricted to 148 synthesis cycles. Interval spacing: 6253 bp (mean); 6270 bp (median). 3553 random probes added. Includes pseudo-autosomal regions from chrX and chrY, though the counts for those regions have been changed to 1 to allow standard analysis. |
| 20 |
GPL9704 |
[GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1 |
62,850 |
University of Cambridge |
2009-11-20 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [GenomeWideSNP_5] Affymetrix Genome-Wide Human SNP 5.0 Chromosome 1, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The SNP Array 5.0 is a single microarray featuring all single nucleotide polymorphisms (SNPs) from the original two-chip Mapping 500K Array Set, as well as 420,000 additional non-polymorphic probes that can measure other genetic differences, such as copy number variation. SNPs on the array are present on 200 to 1,100 base pair (bp) Nsp I or Sty I digested fragments in the human genome, and are amplified using the fifth generation of the Whole-genome Sampling Assay (WGSA). Contains SNPs on NC_000001.9 Annotations correspond to hg18 (NCBI 36.1) |