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| 1 |
GPL1352 |
[U133_X3P] Affymetrix Human X3P Array |
61,359 |
Affymetrix, Inc. |
2004-07-19 |
Affymetrix |
Homo sapiens
 |
GeneChip |
in situ oligonucleotide, [U133_X3P] Affymetrix Human X3P Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip X3P Array was designed specifically for whole-genome expression profiling of formalin-fixed, paraffin-embedded (FFPE) samples, and is now available via the GeneChip Made-to-Order program. Resulting from a collaboration between Affymetrix and Arcturus, this array is optimized as part of a system solution together with the Paradise Reagent System from Arcturus for expression analysis of FFPE samples. FFPE samples introduce unique challenges for microarray analysis, including potential fragmentation and chemical modification of RNA molecules. In order to overcome these challenges, the Paradise Reagent System was developed to provide RNA isolation and amplification reagents optimized for FFPE samples. In addition, the X3P Array is designed to focus on interrogating sequences located closer to the 3' end of the transcripts compared with standard GeneChip arrays. Together, the reagents and array accommodate the characteristics of the FFPE RNA samples, enabling genome-wide profiling. The target sequences on the X3P Arrays are identical to those used for designing the Human Genome U133 Plus 2.0 Array, for a total of 47,000 transcripts with 61,000 probe sets, although the probes on the two types of arrays are significantly different. As a result of the modification to the probe selection criteria, the majority of the probe sets on the X3P arrays are selected from the 300 bases at the most 3' end of the transcripts. This is different from the standard Affymetrix design strategy which selects probe sets within the region of 600 bases proximal to the 3' ends. To select probes for the 47,000 transcripts, it was not possible to identify high-performance probe sets within the shorter 300 base probe selection region for approximately 4,000 transcripts. For these transcripts, two sets of probes are represented on the arrays: 1) the original probe sets from the standard HG-U133 Plus design are replicated on the X3P arrays, and 2) the new, more 3' probe sets are also included although they fell below the minimum probe score selection threshold. In addition, fewer than 200 transcripts from the HG-U133 Plus design are only represented by the HG-U133 Plus probe sets, where no probe sets within the smaller (300 bps) probe selection region could be found. Annotations derived from Affymetrix CSV file dated 6/23/2004 |
| 2 |
GPL4685 |
[U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array |
22,944 |
Affymetrix Japan |
2006-12-20 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [U133AAofAv2] Affymetrix GeneChip HT-HG_U133A Early Access Array, HT-HG_U133A (early access version) high-throughput array (Affy part number 520276) |
| 3 |
GPL16267 |
[skychip1d520579] Affymetrix Human AMLprofiler Array |
133 |
Skyline Diagnostics |
2012-11-09 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [skychip1d520579] Affymetrix Human AMLprofiler Array, It is an RNA chip, however, we employ the SNP algorithm DM from the Affymetrix Power tools. |
| 4 |
GPL15207 |
[PrimeView] Affymetrix Human Gene Expression Array |
49,395 |
Affymetrix, Inc. |
2012-02-08 |
Affymetrix, Inc. |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [PrimeView] Affymetrix Human Gene Expression Array, |
| 5 |
GPL10983 |
[Mitochip_2] Affymetrix Human Mitochondrial Resequencing Array 2.0 |
0 |
Affymetrix, Inc. |
2010-09-27 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [Mitochip_2] Affymetrix Human Mitochondrial Resequencing Array 2.0, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html |
| 6 |
GPL10567 |
[MHC_MAP1_univ] Custom Affymetrix MHC Tiling Array |
386,566 |
Inserm U958, Universite Paris Denis Diderot - Paris 7 |
2010-06-18 |
Affymetrix |
Homo sapiens
|
Tiling Array |
in situ oligonucleotide, [MHC_MAP1_univ] Custom Affymetrix MHC Tiling Array, |
| 7 |
GPL2005 |
[Mapping50K_Xba240] Affymetrix Human Mapping 50K Xba240 SNP Array |
59,015 |
Affymetrix, Inc. |
2005-04-28 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [Mapping50K_Xba240] Affymetrix Human Mapping 50K Xba240 SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mapping 100K Set is the first in a family of products for whole-genome association studies. It is comprised of a set of two arrays that enable genotyping of greater than 100,000 SNPs with a single primer. copy number analysis mean marker distance of 26 kb provides both copy number and allele specific information |
| 8 |
GPL2004 |
[Mapping50K_Hind240] Affymetrix Human Mapping 50K Hind240 SNP Array |
57,299 |
Affymetrix, Inc. |
2005-04-28 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [Mapping50K_Hind240] Affymetrix Human Mapping 50K Hind240 SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Mapping 100K Set is the first in a family of products for whole-genome association studies. It is comprised of a set of two arrays that enable genotyping of greater than 100,000 SNPs with a single primer. copy number analysis mean marker distance of 26 kb provides both copy number and allele specific information |
| 9 |
GPL3720 |
[Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array |
238,378 |
Affymetrix, Inc. |
2006-05-02 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [Mapping250K_Sty] Affymetrix Mapping 250K Sty2 SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays). |
| 10 |
GPL3718 |
[Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array |
262,338 |
Affymetrix, Inc. |
2006-05-02 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [Mapping250K_Nsp] Affymetrix Mapping 250K Nsp SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 500K Array Set provides consistently high coverage across different populations. It is comprised of two arrays, each capable of genotyping on average 250,000 SNPs (approximately 262,000 for Nsp arrays and 238,000 for Sty arrays). |
| 11 |
GPL2641 |
[Mapping10K_Xba142] Affymetrix Human Mapping 10K 2.0 Array |
10,208 |
Affymetrix, Inc. |
2005-07-18 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [Mapping10K_Xba142] Affymetrix Human Mapping 10K 2.0 Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html As with the previous-generation GeneChip® Mapping 10K Array, the GeneChip Mapping 10K 2.0 Array enables researchers to genotype more than 10,000 SNPs in a single experiment with one primer. The GeneChip Mapping 10K 2.0 Array contains equivalent content and performance as the original GeneChip Mapping 10K Array, but advances in photolithographic technology enable it to be produced in a smaller, more cost-efficient format. Now, researchers can genotype 10,000 SNPs in a single experiment at a cost comparable to microsatellite research. Annotations derived from Affymetrix CSV file dated 6/21/2005. |
| 12 |
GPL1266 |
[Mapping10K_Xba131] Affymetrix Human Mapping 10K SNP Array |
11,564 |
Affymetrix, Inc. |
2004-05-28 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [Mapping10K_Xba131] Affymetrix Human Mapping 10K SNP Array, Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html The GeneChip® Human Mapping 10K Array enables genotyping of greater than 10,000 Single Nucleotide Polymorphism (SNP) loci on a single array. The SNPs on this array were chosen from The SNP Consortium (TSC) database based on their presence on 250- to 1,000-basepair Xba I fragments in the human genome. SNPs were chosen based upon high reproducibility, call rate, accuracy, and physical map position. These SNPs have been validated across a minimum of 200 individuals from at least three distinct populations, Caucasian, Asian, and African-American. The average heterozygosity of the markers is greater than .35 across these populations. Annotations taken from CSV (2.8 MB, 3/11/05). |
| 13 |
GPL13330 |
[INDEL01m520678F] Affymetrix human INDEL genotyping array |
0 |
Institute for Genome Sciences |
2011-03-25 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [INDEL01m520678F] Affymetrix human INDEL genotyping array, Custom array. |
| 14 |
GPL11209 |
[HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 12] |
22,197 |
NCBI/NLM/NIH |
2010-11-15 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 12], |
| 15 |
GPL13243 |
[HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 11.0.1] |
19,793 |
NCBI/NLM/NIH |
2011-03-01 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuGene10stv1_Hs_ENSG] Affymetrix GeneChip Human Gene 1.0 ST Array [Brainarray Version 11.0.1], Probe set data extracted from custom CDF [Brainarray Version 11.0.1, HuGene10stv1_Hs_ENTREZG] |
| 16 |
GPL16686 |
[HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version] |
53,981 |
Affymetrix, Inc. |
2013-02-14 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html November 15, 2012: HuGene-2_0-st-v1.na33.hg19.transcript.csv |
| 17 |
GPL11532 |
[HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [transcript (gene) version] |
33,297 |
Affymetrix, Inc. |
2011-01-18 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [transcript (gene) version], HuGene-1_1-st-v1.na32.hg19.transcript.csv #%create_date=Tue Jun 21 17:41:46 2011 PDT #%chip_type=HuGene-1_1-st-v1 #%lib_set_name=HuGene-1_1-st #%lib_set_version=v1 #%genome-species=Homo sapiens #%genome-version=hg19 #%genome-version-ucsc=hg19 #%genome-version-ncbi=GRCh37 #%genome-version-create_date=2009-02-00 #%genome-lifted-method=liftOver #%genome-lifted_from-species=Homo sapiens #%genome-lifted_from-version-ucsc=hg18 #%genome-lifted_from-version-ncbi=36.1 #%netaffx-annotation-date=2011-06-22 #%netaffx-annotation-netaffx-build=32 |
| 18 |
GPL11536 |
[HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [probe set (exon) version] |
257,430 |
Affymetrix, Inc. |
2011-01-18 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [probe set (exon) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html |
| 19 |
GPL15640 |
[HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [CDF: Brainarray Entrez gene CDF v14.1, hugene11stv1hsentrezg] |
19,738 |
NCBI/NLM/NIH |
2012-06-01 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuGene-1_1-st] Affymetrix Human Gene 1.1 ST Array [CDF: Brainarray Entrez gene CDF v14.1, hugene11stv1hsentrezg], This identical to GPL11532 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below. |
| 20 |
GPL6244 |
[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] |
33,297 |
Affymetrix, Inc. |
2007-12-05 |
Affymetrix |
Homo sapiens
|
GeneChip |
in situ oligonucleotide, [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version], Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html #%create_date=Wed Mar 11 16:01:33 2009 PDT #%chip_type=HuGene-1_0-st-v1 #%lib_set_name=HuGene-1_0-st #%lib_set_version=v1 #%genome-species=Homo sapiens #%genome-version=hg18 #%genome-version-ucsc=hg18 #%genome-version-ncbi=36 #%genome-version-create_date=2006-03 #%netaffx-annotation-date=2009-03-16 #%netaffx-annotation-netaffx-build=28 |
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