Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57

Warning: mysqli_query() [function.mysqli-query]: (HY000/5): Out of memory (Needed 359556 bytes) in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 53

Warning: mysqli_fetch_array() expects parameter 1 to be mysqli_result, boolean given in /opt/services/nig/geo/www-e/webapp/lib/DataAccessMysql.php on line 57
RSS
[ Top ] > [ Japan ]
Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(16,283)		   Primates
(80)		   Rodents
(6,896)		   Mammals
(298)		   Vertebrates
(469)		   Invertebrates
(517)		   Plants
(5,385)		   Bacteria
(1,328)		   Viruses
(9)		   Phages
(0)		   Unclassified
(100)		   All
(31,365)		  
  SAGE NlaIII
(17)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(8,212)		   Tiling Array
(0)		   cDNA Array
(0)		   Oligo Array
(6,079)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(17)		   HT-Seq
(0)		   Other
(10)		   All
(16,283)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(0)		   unclassified
(4,644)		   all
(16,283)		  
1   |   2   |   3   |   4   |   5      »      [815]
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM298710 SMAD2/3 localization in TGF-beta-treated HaCaT cells 5,111,669 University of Tokyo 2008-06-17 [GeneChip] Human Promoter Array 1.0R - NCBI build_35 (GPL7026) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Smad2_3_ChIP_DNA Input_DNA title:SMAD2/3 localization in TGF-beta-treated HaCaT cells description:HaCaT cells treated with TGF-beta3 were used for Smad2/3 ChIP. Sheared input genomic DNA was used for control. Both Smad2/3 ChIP and input samples were prepared as biological duplicate.
2 GSM866991 Flag-CDX1 ChIP-chip in gastric epithelial cells: CDX1 induction +, 24 h 5,111,669 University of Tokyo 2012-01-26 [GeneChip] Human Promoter Array 1.0R - NCBI build_35 (GPL7026) genomic Homo sapiens
Homo sapiens		 stomach Flag-CDX1 ChIP-chip in gastric epithelial cells: CDX1 induction +, 24 h
3 GSM243197 hScc1 localization in G2 (Whole Genome #8) 3,138,510 The University of Tokyo 2007-11-15 [Tiling Array] GeneChip Human Tiling 1.0R Array set (8) - NCBI build 36 (GPL6138) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hScc1 localization in G2 (Whole Genome #8) description:hScc1 distribution in G2 phase. Array 8 of 14.
4 GSM243242 CTCF localization in G2 (Whole Genome #8) 3,138,510 The University of Tokyo 2007-11-15 [Tiling Array] GeneChip Human Tiling 1.0R Array set (8) - NCBI build 36 (GPL6138) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:CTCF localization in G2 (Whole Genome #8) description:CTCF distribution in G2 phase. Array 8 of 14. For WCE fraction, the same file as we used for the analysis of hScc1 distribution were used.
5 GSM212916 H3K9Ac ChIP HRG 0hr, chip 10 of 14 3,101,727 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 0hr, MCF-7 WCE control, HRG 0hr, MCF-7
6 GSM212917 H3K9Ac ChIP HRG 2hr, chip 10 of 14 3,101,727 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 2hr, MCF-7 WCE control, HRG 2hr, MCF-7
7 GSM212944 RNA HRG 0hr, chip 10 of 14 3,101,727 RIKEN 2007-07-25 [Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661) RNA Homo sapiens
Homo sapiens		 breast RNA, HRG 0hr, MCF-7
8 GSM212945 RNA HRG 2hr, chip 10 of 14 3,101,727 RIKEN 2007-07-25 [Tiling Array] Human tiling 1.0F array, chip 10 of 14 (GPL5661) RNA Homo sapiens
Homo sapiens		 breast RNA, HRG 2hr, MCF-7
9 GSM212902 H3K9Ac ChIP HRG 0hr, chip 03 of 14 3,101,719 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 0hr, MCF-7 WCE control, HRG 0hr, MCF-7
10 GSM212903 H3K9Ac ChIP HRG 2hr, chip 03 of 14 3,101,719 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 2hr, MCF-7 WCE control, HRG 2hr, MCF-7
11 GSM212930 RNA HRG 0hr, chip 03 of 14 3,101,719 RIKEN 2007-07-25 [Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652) RNA Homo sapiens
Homo sapiens		 breast RNA, HRG 0hr, MCF-7
12 GSM212931 RNA HRG 2hr, chip 03 of 14 3,101,719 RIKEN 2007-07-25 [Tiling Array] Human tiling 1.0F array, chip 3 of 14 (GPL5652) RNA Homo sapiens
Homo sapiens		 breast RNA, HRG 2hr, MCF-7
13 GSM243198 hScc1 localization in G2 (Whole Genome #9) 3,101,522 The University of Tokyo 2007-11-15 [Tiling Array] GeneChip Human Tiling 1.0R Array set (9) - NCBI build 36 (GPL6139) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:hScc1 localization in G2 (Whole Genome #9) description:hScc1 distribution in G2 phase. Array 9 of 14.
14 GSM243241 CTCF localization in G2 (Whole Genome #9) 3,101,522 The University of Tokyo 2007-11-15 [Tiling Array] GeneChip Human Tiling 1.0R Array set (9) - NCBI build 36 (GPL6139) genomic Homo sapiens
Homo sapiens		 unclassified source_name:Chromatin Immuno-precipitated DNA Whole cell extract (WCE) fraction used for the normalization of ChIP fraction. title:CTCF localization in G2 (Whole Genome #9) description:CTCF distribution in G2 phase. Array 9 of 14. For WCE fraction, the same data as we used for the analyses of hScc1 were used.
15 GSM212904 H3K9Ac ChIP HRG 0hr, chip 04 of 14 3,101,389 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 4 of 14 (GPL5654) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 0hr, MCF-7 WCE control, HRG 0hr, MCF-7
16 GSM212905 H3K9Ac ChIP HRG 2hr, chip 04 of 14 3,101,389 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 4 of 14 (GPL5654) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 2hr, MCF-7 WCE control, HRG 2hr, MCF-7
17 GSM212932 RNA HRG 0hr, chip 04 of 14 3,101,389 RIKEN 2007-07-25 [Tiling Array] Human tiling 1.0F array, chip 4 of 14 (GPL5654) RNA Homo sapiens
Homo sapiens		 breast RNA, HRG 0hr, MCF-7
18 GSM212933 RNA HRG 2hr, chip 04 of 14 3,101,389 RIKEN 2007-07-25 [Tiling Array] Human tiling 1.0F array, chip 4 of 14 (GPL5654) RNA Homo sapiens
Homo sapiens		 breast RNA, HRG 2hr, MCF-7
19 GSM212918 H3K9Ac ChIP HRG 0hr, chip 11 of 14 3,100,983 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 11 of 14 (GPL5662) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 0hr, MCF-7 WCE control, HRG 0hr, MCF-7
20 GSM212919 H3K9Ac ChIP HRG 2hr, chip 11 of 14 3,100,983 RIKEN 2007-07-24 [Tiling Array] Human tiling 1.0F array, chip 11 of 14 (GPL5662) genomic Homo sapiens
Homo sapiens		 breast H3K9Ac ChIP, HRG 2hr, MCF-7 WCE control, HRG 2hr, MCF-7
1   |   2   |   3   |   4   |   5      »      [815]
DBCLS | Site Policies | Contact Us