Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(756)		   SAGE RsaI
(0)		   SAGE Sau3A
(15)		   MPSS
(35)		   GeneChip
(234,596)		   Tiling Array
(9,457)		   cDNA Array
(39,248)		   Oligo Array
(103,669)		   Bead Array
(90,658)		   Protein Array
(0)		   Antibody
(1,130)		   RT-PCR
(2,916)		   HT-Seq
(13,834)		   Other
(6,106)		   All
(502,421)		  
  brain
(29,005)		   blood
(139,913)		   connective
(34,648)		   reproductive
(27,518)		   muscular
(8,601)		   digestive
(23,268)		   liver
(16,439)		   lung
(20,411)		   urinary
(13,086)		   endo/exo-crine
(48,364)		   embryo
(3,899)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(31,732)		   unclassified
(105,537)		   all
(502,421)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM301562 HEK Input DNA rep1 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep1 description:raw sequence 070710_4
2 GSM301564 HEK Input DNA rep2 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep2 description:raw sequence 070929_5
3 GSM301565 HEK Input DNA rep3 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Input DNA title:HEK Input DNA rep3 description:raw sequence 070929_6
4 GSM301566 HEK ChIP DNA rep1 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Polymerase II ChIP DNA title:HEK ChIP DNA rep1 description:raw sequence 070824_2
5 GSM301567 HEK ChIP DNA rep2 12,814,371 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:Polymerase II ChIP DNA title:HEK ChIP DNA rep2 description:raw sequence 070929_4
6 GSM301568 HEK293T cells rep1 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 kidney Human embryonic kidney cells
7 GSM301581 HEK293T cells rep2 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 kidney Human embryonic kidney cells
8 GSM301582 B cells rep1 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lymphnode Ramos lymphoma B cells
9 GSM301583 B cells rep2 12,004,594 Max Planck Institute for molecular genetics 2008-06-30 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 lymphnode Ramos lymphoma B cells
10 GSM652439 human_T12_RNA-seq 6,293,859 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 thyroid/parathyroid primary thyroid cell line, IFN-alpha, 12 hrs
11 GSM652440 human_T24_RNA-seq 4,673,554 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 thyroid/parathyroid primary thyroid cell line, IFN-alpha, 24 hrs
12 GSM652438 human_T0_RNA-seq 3,261,581 Mount Sinai School of Medicine 2011-01-10 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 thyroid/parathyroid primary thyroid cell line, untreated
13 GSM769509 control, cytoplasmic fraction 2,614,999 MDC, Berlin-Buch 2011-07-31 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:cell line title:control, cytoplasmic fraction description:cytoplasmic fraction was isolated using PARIS kit (Ambion)
14 GSM531986 HCV(+) HCC Tissue Sample 2,543,980 National Key Laboratory of Medical Immunology and Institute of Immunology, Second Military Medical University. 2010-04-09 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:HCV(+) HCC Tissue title:HCV(+) HCC Tissue Sample description:18-30 nt small RNA
15 GSM531985 HCV(+) Adjacent Tissue Sample 2,503,533 National Key Laboratory of Medical Immunology and Institute of Immunology, Second Military Medical University. 2010-04-09 [HT Sequencing] Illumina Genome Analyzer (Homo sapiens) (GPL9052) SRA Homo sapiens
Homo sapiens		 unclassified source_name:HCV(+) Adjacent Tissue title:HCV(+) Adjacent Tissue Sample description:18-30 nt small RNA
16 GSM818584 microRNA-Seq of timepoint3 2,365,315 Stanford 2011-10-17 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 peripheral blood blood cell
17 GSM818583 microRNA-Seq of timepoint2 1,939,548 Stanford 2011-10-17 [HT Sequencing] Illumina Genome Analyzer IIx (Homo sapiens) (GPL10999) SRA Homo sapiens
Homo sapiens		 peripheral blood blood cell
18 GSM769510 control, total cell content 1,921,862 MDC, Berlin-Buch 2011-07-31 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:cell line title:control, total cell content description:total cell content of unperturbed cells was sequenced
19 GSM510475 293cand2 1,674,357 MIT/Whitehad Institute 2010-02-17 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:transfected with candidate hairpins title:293cand2 description:sample name: 293vert3
20 GSM769511 Dicer knock-down, cytoplasmic fraction 1,672,110 MDC, Berlin-Buch 2011-07-31 [HT Sequencing] Illumina Genome Analyzer II (Homo sapiens) (GPL9115) SRA Homo sapiens
Homo sapiens		 unclassified source_name:cell line title:Dicer knock-down, cytoplasmic fraction description:Dicer mRNA was knocked down using siDicer, cytoplasmic fraction was isolated using PARIS kit (Ambion)
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