Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(987)
  Primates
(0)
  Rodents
(490)
  Mammals
(703)
  Vertebrates
(207)
  Invertebrates
(0)
  Plants
(196)
  Bacteria
(227)
  Viruses
(0)
  Phages
(0)
  Unclassified
(42)
  All
(2,852)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(913)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(25)
  Bead Array
(12)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(20)
  HT-Seq
(15)
  Other
(2)
  All
(987)
 
  brain
(20)
  blood
(20)
  connective
(83)
  reproductive
(23)
  muscular
(16)
  digestive
(76)
  liver
(0)
  lung
(10)
  urinary
(441)
  endo/exo-crine
(171)
  embryo
(0)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(13)
  unclassified
(114)
  all
(987)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM30947 WM793_treated 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line WM793 treated with 2ug/ml DAC as per publication
2 GSM30938 WM793_2 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line. Poorly tumourigenic in nude mice. Biological Replicate of WM793_1.
3 GSM30937 WM793_1 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line. Poorly tumourigenic in nude mice.
4 GSM30942 WM793-P2N1_2 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line. Subline of WM793. Highly tumourigenic in nude mice. Biological replicate of WM793-P2N1_1.
5 GSM30941 WM793-P2N1_1 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line. Subline of WM793. Highly tumourigenic in nude mice.
6 GSM30949 WM793-P2N1-treated 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line WM793-P2N1 treated with 2ug/ml DAC as per publication
7 GSM30940 WM793-P1N1_2 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line. Subline of WM793. Highly tumourigenic in nude mice. Biological replicate of WM793-P1N1_1.
8 GSM30939 WM793-P1N1_1 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line. Subline of WM793. Highly tumourigenic in nude mice.
9 GSM30948 WM793-P1N1-treated 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line WM793-P1N1 treated with 2ug/ml DAC as per publication
10 GSM30946 WM793 7,129 Conway Institute 2004-09-22 [GeneChip] [Hu6800] Affymetrix Human Full Length HuGeneFL Array (GPL80) RNA Homo sapiens
Homo sapiens
skin Melanoma cell line
11 GSM52091 vehicle treated experiment B (4mM HCL/1% BSA) 24 hours 22,283 University College Dublin 2005-05-22 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens
peripheral nerve Human GFAP-negative lamina cribrosa cells were generated from optic nerve head tissue. They were treated for 24 hours with vehicle (4mM HCl/1% BSA). RNA extraced using Qiagen RNeasy mini collumns. *.Cel file normalised using Robust multichip average (RMA). Cell cultures from human donor A. Experiment conducted in duplicate (separate passages).
12 GSM52089 vehicle treated experiment A (4mM HCL/1% BSA) 24 hours 22,283 University College Dublin 2005-05-22 [GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96) RNA Homo sapiens
Homo sapiens
peripheral nerve Human GFAP-negative lamina cribrosa cells were generated from optic nerve head tissue. They were treated for 24 hours with 4mM HCL/ 1% BSA (vehicle). RNA extraced using Qiagen RNeasy mini collumns. *.Cel file normalised using Robust multichip average (RMA). Cell cultures from human donor A. Experiment conducted in duplicate (separate passages).
13 GSM501486 Tumor-her2pos-4 358 National University of Ireland, Galway 2010-01-27 [Oligo Array] Homo sapiens 0.4K miChip v8 (GPL6127) RNA Homo sapiens
Homo sapiens
unclassified source_name:ductal title:Tumor-her2pos-4 description:2007-02-19_141_0532.gpr
14 GSM501485 Tumor-her2pos-3 358 National University of Ireland, Galway 2010-01-27 [Oligo Array] Homo sapiens 0.4K miChip v8 (GPL6127) RNA Homo sapiens
Homo sapiens
unclassified source_name:ductal title:Tumor-her2pos-3 description:2007-02-19_140_0532.gpr
15 GSM501484 Tumor-her2pos-2 358 National University of Ireland, Galway 2010-01-27 [Oligo Array] Homo sapiens 0.4K miChip v8 (GPL6127) RNA Homo sapiens
Homo sapiens
unclassified source_name:ductal title:Tumor-her2pos-2 description:2007-02-19_146_0532.gpr
16 GSM501483 Tumor-her2neg-4 358 National University of Ireland, Galway 2010-01-27 [Oligo Array] Homo sapiens 0.4K miChip v8 (GPL6127) RNA Homo sapiens
Homo sapiens
unclassified source_name:lobular title:Tumor-her2neg-4 description:2007-02-19_138_0532.gpr
17 GSM501482 Tumor-her2neg-3 358 National University of Ireland, Galway 2010-01-27 [Oligo Array] Homo sapiens 0.4K miChip v8 (GPL6127) RNA Homo sapiens
Homo sapiens
unclassified source_name:ductal title:Tumor-her2neg-3 description:2007-02-19_137_0532.gpr
18 GSM501481 Tumor-her2neg-2 358 National University of Ireland, Galway 2010-01-27 [Oligo Array] Homo sapiens 0.4K miChip v8 (GPL6127) RNA Homo sapiens
Homo sapiens
unclassified source_name:ductal title:Tumor-her2neg-2 description:2007-02-19_135_0532.gpr
19 GSM501480 Tumor-her2neg-1 358 National University of Ireland, Galway 2010-01-27 [Oligo Array] Homo sapiens 0.4K miChip v8 (GPL6127) RNA Homo sapiens
Homo sapiens
unclassified source_name:ductal title:Tumor-her2neg-1 description:2007-02-19_131_0532.gpr
20 GSM149849 trans-10, cis-12 CLA treated 54,675 University College Cork 2006-12-13 [GeneChip] [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array (GPL570) RNA Homo sapiens
Homo sapiens
colon Caco-2 cells - cis-12 CLA treated
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