Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(2,851)

Viruses
(0)

Phages
(0)

SAGE RsaI
(0)

MPSS
(0)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(0)

All
(2,851)

adult aerial structure
(0)

young aerial structure
(0)

root
(0)

meristem/growing tissue
(0)

flower/sexual organ
(0)

seed/fruit/grain
(0)

pooled
(143)

unclassified
(75)

all
(2,851)

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	Sample ID	Title	Number of Data	Institute	Submission date	Platform	Sample type	Species	Organ class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GSM32711	bacteria 01	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:bacteria 01 control 01 title:bacteria 01 description:epithelial cells were in contact with S. aureus or not (control cells).
2	GSM32712	bacterial supernatant 04	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:bacterial supernatant 04 control 04 title:bacterial supernatant 04 description:epithelial cells were in contact with S. aureus supernatant or not (control cells).
3	GSM32713	bacterial supernatant 09	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:bacterial supernatant 09 control 09 title:bacterial supernatant 09 description:epithelial cells were in contact with S. aureus supernatant or not (control cells).
4	GSM32714	bacterial supernatant 10	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:bacterial supernatant 10 control 10 title:bacterial supernatant 10 description:epithelial cells were in contact with S. aureus supernatant or not (control cells).
5	GSM32715	bacteria 02	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:bacteria 02 control 02 title:bacteria 02 description:epithelial cells were in contact with S. aureus or not (control cells).
6	GSM32716	bacteria 03	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:bacteria 03 control 03 title:bacteria 03 description:epithelial cells were in contact with S. aureus or not (control cells).
7	GSM32717	bacteria 05	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:control 05 bacteria 05 title:bacteria 05 description:epithelial cells were in contact with S. aureus or not (control cells).
8	GSM32718	bacterial supernatant 08	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:control 08 bacterial supernatant 08 title:bacterial supernatant 08 description:epithelial cells were in contact with S. aureus supernatant or not (control cells).
9	GSM32719	bacterial supernatant 11	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:control 11 bacterial supernatant 11 title:bacterial supernatant 11 description:epithelial cells were in contact with S. aureus supernatant or not (control cells).
10	GSM32720	bacterial supernatant 12	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:control 12 bacterial supernatant 12 title:bacterial supernatant 12 description:epithelial cells were in contact with S. aureus supernatant or not (control cells).
11	GSM32721	bacteria 06	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:control 06 bacteria 06 title:bacteria 06 description:epithelial cells were in contact with S. aureus or not (control cells).
12	GSM32722	bacteria 07	23,040	CNRS	2004-10-20	[cDNA Array] cDNA microarray quad 5000 (GPL1521)	RNA	Homo sapiens	unclassified	source_name:control 07 bacteria 07 title:bacteria 07 description:epithelial cells were in contact with S. aureus or not (control cells).
13	GSM34949	H6c7-Kr_U133A	22,283	Ontario Cancer Institute/ Princess Margaret Hospital	2004-11-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:K-ras oncogene-expressing H6c7 cell line title:H6c7-Kr_U133A description:K-ras oncogene was introduced into H6c7 cell line. RNA was extracted using phenol/chloroform and purified with Qiagen RNeasy kit. cRNA was produced using standard Affymetrix procedures.
14	GSM37485	HEK293T cells, control 1	22,283	Salk Institute	2004-12-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:Human HEK293T cell line title:HEK293T cells, control 1 description:Culture of human HEK293T cells, no treatment (as compared to forskolin treated samples). RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples, and 2 forskolin treated samples from ACREB transfected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org). Keywords = HEK293T, cAMP induced genes, forskolin, CREB target genes
15	GSM37486	HEK293T cells, control 2	22,283	Salk Institute	2004-12-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:Human HEK293T cell line title:HEK293T cells, control 2 description:Culture of human HEK293T cells, no treatment (as compared to forskolin treated samples). RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples, and 2 forskolin treated samples from ACREB transfected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org). Keywords = HEK293T, cAMP induced genes, forskolin, CREB target genes
16	GSM37487	HEK293T cells, Forskolin 1	22,283	Salk Institute	2004-12-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:Human HEK293T cell line title:HEK293T cells, Forskolin 1 description:Culture of human HEK293T cells, with 1hr forskolin (a cAMP agonist) treatment. RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples, and 2 forskolin treated samples from ACREB transfected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org). Keywords = HEK293T, cAMP induced genes, forskolin, CREB target genes
17	GSM37488	HEK293T cells, Forskolin 2	22,283	Salk Institute	2004-12-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:Human HEK293T cell line title:HEK293T cells, Forskolin 2 description:Culture of human HEK293T cells, with 1hr forskolin (a cAMP agonist) treatment. RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples, and 2 forskolin treated samples from ACREB transfected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org). Keywords = HEK293T, cAMP induced genes, forskolin, CREB target genes
18	GSM37489	HEK293T cells, ACREB Forskolin 1	22,283	Salk Institute	2004-12-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:Human HEK293T cell line title:HEK293T cells, ACREB Forskolin 1 description:Culture of human HEK293T cells, transfected with ACREB, a dominant negative form of the CREB protein, and treated with 1hr forskolin (a cAMP agonist). RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples, and 2 forskolin treated samples from ACREB transfected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org). Keywords = HEK293T, cAMP induced genes, forskolin, CREB target genes
19	GSM37490	HEK293T cells, ACREB Forskolin 2	22,283	Salk Institute	2004-12-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:Human HEK293T cell line title:HEK293T cells, ACREB Forskolin 2 description:Culture of human HEK293T cells, transfected with ACREB, a dominant negative form of the CREB protein, and treated with 1hr forskolin (a cAMP agonist). RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. 2 control and 2 forskolin treated samples, and 2 forskolin treated samples from ACREB transfected cells were analyzed. Data was analyzed using dChIP software (www.dchip.org). Keywords = HEK293T, cAMP induced genes, forskolin, CREB target genes
20	GSM37491	HEK293T cells, forskolin 0hr 1	22,283	Salk Institute	2004-12-10	[GeneChip] [HG-U133A] Affymetrix Human Genome U133A Array (GPL96)	RNA	Homo sapiens	unclassified	source_name:Human HEK293T cell line title:HEK293T cells, forskolin 0hr 1 description:Culture of human HEK293T cells, treated with forskolin for 0hr, 1hr and 4 hr. RNA was extracted using the Qiagen RNeasy kit. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA. Duplicates for each time point is used. Data was analyzed using dChIP software (www.dchip.org). Keywords = HEK293T, cAMP induced genes, forskolin, CREB target genes

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