Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,705)		   Primates
(37)		   Rodents
(1,748)		   Mammals
(295)		   Vertebrates
(402)		   Invertebrates
(1,004)		   Plants
(2,170)		   Bacteria
(1,636)		   Viruses
(78)		   Phages
(8)		   Unclassified
(399)		   All
(11,528)		  
  SAGE NlaIII
(5)		   SAGE RsaI
(0)		   SAGE Sau3A
(1)		   MPSS
(2)		   GeneChip
(310)		   Tiling Array
(702)		   cDNA Array
(1,050)		   Oligo Array
(1,326)		   Bead Array
(119)		   Protein Array
(1)		   Antibody
(20)		   RT-PCR
(82)		   HT-Seq
(50)		   Other
(36)		   All
(3,705)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11332 μParaflo™ MicroRNA microarray Assay 3,968 Sun Yat-sen University 2010-12-18 LC Sciences Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, μParaflo™ MicroRNA microarray Assay,
2 GPL6745 Eppendorf DualChip Human Cancer v1.1 293 "San Martino" Hospital 2008-04-16 Eppendorf AG, Hamburg, Germany Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Eppendorf DualChip Human Cancer v1.1, No. of genes: 294 (including housekeeping genes) No. of housekeeping genes: 13 No. of spots per gene: 3 Average spot size: 200 µm Controls: RNA spiking mixture, housekeeping genes, positive/negative hybridization controls, positive/negative detection controls No. of spiking RNAs for normalization: 6
3 GPL875 Agilent Human 1 cDNA Microarray (G4100A) [layout A] 18,564 Agilent Technologies 2004-01-02 Agilent Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Agilent Human 1 cDNA Microarray (G4100A) [layout A], 12,814 unique clones, 97% map to named human genes Sourced from Incyte's UniGene 1 and Human Drug Target DNA clone sets Barcode location:Bottom Scan Side:Front This platform should be used for the following prints: 000437_D_20030121_FSPortraitBcodeDown 000437_D_20010620_FSPortraitBcodeDown Please reference this platform if you used an array with the same layout, even if the print lot is different than specified above. The GEO staff will update the description of this platform to include additional print lots as encountered. Print-specific information should be accounted for in the sample hybridization tables (eg. NULL value insertions for spots to be ignored).
4 GPL876 Agilent Human 1 cDNA Microarray (G4100A) [layout B] 18,564 Agilent Technologies 2004-01-02 Agilent Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Agilent Human 1 cDNA Microarray (G4100A) [layout B], 12,814 unique clones, 97% map to named human genes Sourced from Incyte's UniGene 1 and Human Drug Target DNA clone sets Barcode location:Bottom Scan Side:Front This platform should be used for the following prints: 000478_D_20020807_FSPortraitBcodeDown 000478_D_20030121_FSPortraitBcodeDown 000526_D_20030121_FSPortraitBcodeDown 000478_D_20011130_FSPortraitBcodeDown Please reference this platform if you used an array with the same layout, even if the print lot is different than specified above. The GEO staff will update the description of this platform to include additional print lots as encountered. Print-specific information should be accounted for in the sample hybridization tables (eg. NULL value insertions for spots to be ignored).
5 GPL879 Agilent Human 2 cDNA Microarray (G4101A) [layout A] 18,564 Agilent Technologies 2004-01-02 Agilent Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Agilent Human 2 cDNA Microarray (G4101A) [layout A], 14,355 unique clones Sourced from Incyte's LifeSeq® Foundation 1 & 2 clone sets Barcode location:Bottom Scan Side:Front This platform should be used for the following prints: 000450_D_20020516_FSPortraitBcodeDown 000542_D_20021122_FSPortraitBcodeDown Please reference this platform if you used an array with the same layout, even if the print lot is different than specified above. The GEO staff will update the description of this platform to include additional print lots as encountered. Print-specific information should be accounted for in the sample hybridization tables (eg. NULL value insertions for spots to be ignored).
6 GPL880 Agilent Human 2 cDNA Microarray (G4101A) [layout B] 18,564 Agilent Technologies 2004-01-02 Agilent Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Agilent Human 2 cDNA Microarray (G4101A) [layout B], 14,355 unique clones Sourced from Incyte's LifeSeq® Foundation 1 & 2 clone sets Barcode location:Bottom Scan Side:Front This platform should be used for the following prints: 000464_D_20020516_FSPortraitBcodeDown Please reference this platform if you used an array with the same layout, even if the print lot is different than specified above. The GEO staff will update the description of this platform to include additional print lots as encountered. Print-specific information should be accounted for in the sample hybridization tables (eg. NULL value insertions for spots to be ignored).
7 GPL561 Abeta-activated Microglia Part 1 28,800 AGY Therapeutics Inc. 2003-10-22 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Abeta-activated Microglia Part 1, RNA Preparation Total RNA from abeta stimulated cells was isolated using Tri Star reagent according to the manufacturer's instructions (Invitrogen, Carlsbad, CA). The resulting RNA was treated with RNAse free DNAse (Ambion, Austin, Texas) for 40 minutes at 37.C. Isolation of mRNA was carried out using Oligotex (Qiagen, Chatsworth, CA). Library Generation To construct the subtractive and normalized cDNA libraries, reverse transcription and second strand synthesis were performed using the Superscript II reverse transcription kit (Invitrogen, Carlsbad, CA) with an anchored Oligo dT (30) primer. Subtractive and normalized cDNA libraries were generated using suppression PCR. Array Creation Subtracted and normalized cDNA libraries were cloned into the pCR2.1 vector (Invitrogen, Carlsbad, CA), and plated. Single colonies were picked into 384 well plates using an automated colony picker (Q-Pix, Genetix, Cambridge, UK) to grow overnight and subsequently serve as templates for PCR. PCR products were spotted on Nylon membranes using a 384 pin head arrayer (Q-bot, Genetix, Cambridge, UK). The spotted PCR product on all filters were cross-linked to the membrane by UV light. Filters were neutralized and denatured using standard protocols. Library Description SL00097:3h abeta stimulated SL00098:6h abeta stimulated SL00099:12h abeta stimulated Related Platforms GPL562
8 GPL562 Abeta-activated Microglia Part 2 28,800 AGY Therapeutics Inc. 2003-10-22 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Abeta-activated Microglia Part 2, RNA Preparation Total RNA from abeta stimulated cells was isolated using Tri Star reagent according to the manufacturer's instructions (Invitrogen, Carlsbad, CA). The resulting RNA was treated with RNAse free DNAse (Ambion, Austin, Texas) for 40 minutes at 37.C. Isolation of mRNA was carried out using Oligotex (Qiagen, Chatsworth, CA). Library Generation To construct the subtractive and normalized cDNA libraries, reverse transcription and second strand synthesis were performed using the Superscript II reverse transcription kit (Invitrogen, Carlsbad, CA) with an anchored Oligo dT (30) primer. Subtractive and normalized cDNA libraries were generated using suppression PCR. Array Creation Subtracted and normalized cDNA libraries were cloned into the pCR2.1 vector (Invitrogen, Carlsbad, CA), and plated. Single colonies were picked into 384 well plates using an automated colony picker (Q-Pix, Genetix, Cambridge, UK) to grow overnight and subsequently serve as templates for PCR. PCR products were spotted on Nylon membranes using a 384 pin head arrayer (Q-bot, Genetix, Cambridge, UK). The spotted PCR product on all filters were cross-linked to the membrane by UV light. Filters were neutralized and denatured using standard protocols. Library Description SL00099:12h abeta stimulated SL00100:18h abeta stimulated SL00101:24h abeta stimulated Related Platforms GPL561
9 GPL8307 AIST Human EstrArray 120 AIST 2009-03-16 InfoGenes, Japan Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, AIST Human EstrArray,
10 GPL10536 TAGC Homo sapiens 9k (HuSG9k) v1 9,216 Aix Marseille Université 2010-06-14 TAGC, INSERM U928 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, TAGC Homo sapiens 9k (HuSG9k) v1, Nylon based microarray with cDNA probes
11 GPL5020 Filgen Array Human25K 25,344 Akita University School of Medicine 2007-03-22 Filgen Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Filgen Array Human25K,
12 GPL15524 AECOM Human 28K HH5 series 11,164 Albert Einstein College of Medicine 2012-05-03 Albert Einstein College of Medicine Microarray Facility Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, AECOM Human 28K HH5 series,
13 GPL365 AECOM H1 series 8,976 Albert Einstein College of Medicine 2003-07-18 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, AECOM H1 series, cDNA Spotted array; Research Genetics human EST clone set; 8,707 probe spots Keywords = EMTs Keywords = TGF-β
14 GPL364 AECOM 5H series 8,064 Albert Einstein College of Medicine 2003-07-18 Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, AECOM 5H series, cDNA spotted microarray; Research Genetics human EST library Keywords = EMTs, TGF-β
15 GPL3073 UHN Human 19K v7 array 19,200 ARC Seibersdorf research GmbH 2005-11-11 UHN Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, UHN Human 19K v7 array,
16 GPL10800 BAC V5 array 1,792 Baylor College of medicine 2010-08-13 BCM Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, BAC V5 array,
17 GPL10801 BAC V5.1 array 1,792 Baylor College of medicine 2010-08-13 BCM Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, BAC V5.1 array,
18 GPL14360 BCCRC whole genome tilling path array v2 (March 2006 build) 53,856 BC Cancer Research Centre 2011-08-29 Wan Lam lab, BCCRC array laboratory Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, BCCRC whole genome tilling path array v2 (March 2006 build),
19 GPL8774 BCCRC 27K SMRT array 53,856 BC Cancer Research Centre 2009-06-29 Lam Lab, BC Cancer Agency Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, BCCRC 27K SMRT array,
20 GPL127 Atlas Human 1.2 Array (Cat. #7850-1) 1,185 BD Biosciences Clontech 2002-04-24 BD Biosciences Clontech Homo sapiens
Homo sapiens		 cDNA Array spotted DNA/cDNA, Atlas Human 1.2 Array (Cat. #7850-1), Nylon, broad-coverage human cDNA array. The cDNA fragments (200-600 bp) are PCR-amplified using gene-specific primers, and are selected so that they lack repetitive elements and have minimal homology with other genes on the array. Also see Cat# 634527 at http://www.clontech.com/clontech/atlas/genelists/index.shtml
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