Gene Expression Omnibus (GEO) Overview Version：2013-05-25Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(3,747)		   Primates
(38)		   Rodents
(1,772)		   Mammals
(300)		   Vertebrates
(408)		   Invertebrates
(1,027)		   Plants
(2,220)		   Bacteria
(1,678)		   Viruses
(78)		   Phages
(8)		   Unclassified
(422)		   All
(11,747)		  
  SAGE NlaIII
(21)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(28)		   Tiling Array
(119)		   cDNA Array
(214)		   Oligo Array
(381)		   Bead Array
(2)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(1)		   HT-Seq
(253)		   Other
(6)		   All
(1,027)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL6946 MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) 11,205,620 UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 HT Sequencing other, MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa),
2 GPL6817 SKI D. melanogaster small RNA sequenced by Solexa 5,222,148 Sloan-Kettering Institute 2008-05-05 Drosophila melanogaster
Drosophila melanogaster		 HT Sequencing other, SKI D. melanogaster small RNA sequenced by Solexa,
3 GPL10882 Winzeler Lab Plasmodium vivax tiling array (PvivaxLib520507) 3,533,701 The Scripps Research Institute 2010-09-04 Affymetrix Plasmodium vivax
Plasmodium vivax		 Tiling Array in situ oligonucleotide, Winzeler Lab Plasmodium vivax tiling array (PvivaxLib520507),
4 GPL3923 Affymetrix Drosophila Melanogaster Antisense Tiling Array 3,214,785 Affymetrix, Inc. 2006-06-26 Affymetrix Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Affymetrix Drosophila Melanogaster Antisense Tiling Array, 35bp Resolution Oligonucleotide Tiling Array Annotation in this record is based on BDGP Release 4, Apr 2004 version Keywords: synthetic, oligonucleotide, tiling array
5 GPL6882 Affymetrix Drosophila Genome Tiling Array 1.0F (Dm35b_MF_v02) 3,010,025 University of Chicago 2008-05-21 Affymetrix Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Affymetrix Drosophila Genome Tiling Array 1.0F (Dm35b_MF_v02), Because the original microarray design was unfinished before release 4 of the genome was published, reannotation was undertaken. All 6,553,600 probes were used as queries against the D. melanogaster release 4 Flybase genome with Megablast with a word size of 12. This type of search guarantees successful location of homology maintaining at least 15 (word size + 3) consecutive perfect matches. We kept probes exhibiting the following characteristics: for each probe, both forward and reverse complements are unique on the array; the probe matched the genome perfectly; each probe matched the genome at 100% identity; each probe hit the genome only one time. We reported the position in the genome that the 13th basepair that the probe maps to, the muller element it maps to, the total number of guanine and cytosine basis in the probe, and the predicted melting temperature of the probe as calculated by the EMBOSS dan program.
6 GPL11273 McIntyre D. simulans 2m v1.0 2,463,424 UF 2010-12-02 Affymetrix Drosophila simulans
Drosophila simulans		 GeneChip in situ oligonucleotide, McIntyre D. simulans 2m v1.0,
7 GPL11147 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (1 of 4) 2,166,670 Indiana University 2010-10-29 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (1 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (1 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
8 GPL11148 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (2 of 4) 2,166,669 Indiana University 2010-10-29 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (2 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (2 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
9 GPL11149 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (3 of 4) 2,166,669 Indiana University 2010-10-30 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (3 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (3 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
10 GPL11150 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (4 of 4) 2,166,669 Indiana University 2010-10-30 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (4 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (4 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
11 GPL16800 NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (1 of 4) [080222_Nvit1_JC_ChIP_HX1] 2,160,888 Georgia Health Sciences University 2013-03-17 NimbleGen Nasonia vitripennis
Nasonia vitripennis		 Tiling Array in situ oligonucleotide, NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (1 of 4) [080222_Nvit1_JC_ChIP_HX1], This is a Jewel Wasp (Nasonia vitripennis) whole-genome tiling array set (1 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. The array is based on assembly Nvit_1.0. Native array description file: 080222_Nvit1_JC_ChIP_HX1_1.ndf Native array description file: 080222_Nvit1_JC_ChIP_HX1_1.pos Native array description file: 080222_Nvit1_JC_ChIP_HX1_1.ncd The GenBank and RefSeq accessions.version for the scaffolds in the .pos file are available in the supplementary file 'GPL16800_accessions_for_array_set.txt'.
12 GPL16801 NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (2 of 4) [080222_Nvit1_JC_ChIP_HX1] 2,160,888 Georgia Health Sciences University 2013-03-17 NimbleGen Nasonia vitripennis
Nasonia vitripennis		 Tiling Array in situ oligonucleotide, NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (2 of 4) [080222_Nvit1_JC_ChIP_HX1], This is a Jewel Wasp (Nasonia vitripennis) whole-genome tiling array set (2 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. The array is based on assembly Nvit_1.0. Native array description file: 080222_Nvit1_JC_ChIP_HX1_2.ndf Native array description file: 080222_Nvit1_JC_ChIP_HX1_2.pos Native array description file: 080222_Nvit1_JC_ChIP_HX1_2.ncd The GenBank and RefSeq accessions.version for the scaffolds in the .pos file are available in the supplementary file 'GPL16801_accessions_for_array_set.txt'.
13 GPL16802 NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (3 of 4) [080222_Nvit1_JC_ChIP_HX1] 2,160,888 Georgia Health Sciences University 2013-03-17 NimbleGen Nasonia vitripennis
Nasonia vitripennis		 Tiling Array in situ oligonucleotide, NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (3 of 4) [080222_Nvit1_JC_ChIP_HX1], This is a Jewel Wasp (Nasonia vitripennis) whole-genome tiling array set (3 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. The array is based on assembly Nvit_1.0. Native array description file: 080222_Nvit1_JC_ChIP_HX1_3.ndf Native array description file: 080222_Nvit1_JC_ChIP_HX1_3.pos Native array description file: 080222_Nvit1_JC_ChIP_HX1_3.ncd The GenBank and RefSeq accessions.version for the scaffolds in the .pos file are available in the supplementary file 'GPL16802_accessions_for_array_set.txt'.
14 GPL16803 NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (4 of 4) [080222_Nvit1_JC_ChIP_HX1] 2,160,887 Georgia Health Sciences University 2013-03-17 NimbleGen Nasonia vitripennis
Nasonia vitripennis		 Tiling Array in situ oligonucleotide, NimbleGen Nasonia vitripennis 1.0 Whole-genome Tiling Array Set (4 of 4) [080222_Nvit1_JC_ChIP_HX1], This is a Jewel Wasp (Nasonia vitripennis) whole-genome tiling array set (4 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. The array is based on assembly Nvit_1.0. Native array description file: 080222_Nvit1_JC_ChIP_HX1_4.ndf Native array description file: 080222_Nvit1_JC_ChIP_HX1_4.pos Native array description file: 080222_Nvit1_JC_ChIP_HX1_4.ncd The GenBank and RefSeq accessions.version for the scaffolds in the .pos file are available in the supplementary file 'GPL16803_accessions_for_array_set.txt'.
15 GPL15837 SARS_Oikopleura_WG_til (probe-level) 2,159,690 Sars International Centre for Marine Molecular Biology 2012-07-23 NimbleGen Oikopleura dioica
Oikopleura dioica		 Tiling Array in situ oligonucleotide, SARS_Oikopleura_WG_til (probe-level), O. dioica custom-made whole genome tiling array with 2,173,626 oligonucleotide features including 13,936 random negative controls. The probes have 50-75 bases size range and cover the entire 70 Mb genome with average overlap between adjacent probes of approximately 30 bases. native array description file: SARS_Oikopleura_WG_til.ndf native array description file: SARS_Oikopleura_WG_til.pos, SARS_Oikopleura_WG_til_probe_locations.gff
16 GPL10639 NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array 2,157,868 University of Cambridge 2010-06-30 NimbleGen Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array, DM5_Tiling_Array Platform annotations based on Drosophila melanogaster, BDGP Release 5, April 2006. NimbleGen ChIP 2.1M WG-T (2.1M Drosophila melanogaster - Whole Genome Tiling Set) Design_ID = 6725 Native NimbleGen files linked below. From NimbleGen's website: * Format: 2.1M * Source: UCSC * Build: DM5 * Probe Length: 50-75mer * Median Probe Spacing: 55bp * Design Name: D. mel ChIP 2.1M WG-T Arr Del
17 GPL15057 NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725] 2,157,868 NimbleGen Systems, Inc. 2011-12-23 NimbleGen Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725], Platform annotations based on UCSC dm3 (BDGP Release 5). NimbleGen ChIP 2.1M WG-T (2.1M Drosophila melanogaster - Whole Genome Tiling Set) Design_ID = 6725 Native NimbleGen files linked below. From NimbleGen's website: * Format: 2.1M * Source: UCSC * Build: DM3 * Probe Length: 50-75mer * Median Probe Spacing: 55bp * Design Name: D. mel ChIP 2.1M WG-T Arr Del
18 GPL15641 NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [100718_DM_5_Catalog_tiling_HX1] 2,157,868 NimbleGen Systems, Inc. 2012-06-01 NimbleGen Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [100718_DM_5_Catalog_tiling_HX1], D. mel ChIP 2.1M WG-T Arr Del Design Name: 100718_DM_5_HX1_Catalog_tiling1 Design Name: 100718_DM_5_HX1_Catalog_tiling2 Design Name: 100718_DM_5_HX1_Catalog_tiling3 Design_ID = 535483 Format: 2.1M Build: UCSC DM3 [corresponds to BDGP/FlyBaseGenBank Release 5] SLIDE_LAYOUT_NAME: NimbleChip_HX1
19 GPL7098 NimbleGen C_elegans_WS170_Tiling_Iso_HX1 tiling design 2,143,307 Fred Hutchinson Cancer Research Center 2008-07-25 NimbleGen Systems Inc. Caenorhabditis elegans
Caenorhabditis elegans		 Tiling Array in situ oligonucleotide, NimbleGen C_elegans_WS170_Tiling_Iso_HX1 tiling design, Tiling array using NimbleGen platform (DesignID=6112). WormBase release WS170. Complete tiling of pseudo-chromosomes; no filtering; isothermal (target tm=76); mean probe length=54 (range=50 to 75); mean distance between probes=-6 (range=-18 to 1111); all probes on forward strand.
20 GPL8647 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 2,142,000 UNC 2009-06-04 Nimblegen Systems Inc Caenorhabditis elegans
Caenorhabditis elegans		 Tiling Array in situ oligonucleotide, 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1, Native NimbleGen files (ndf, pos) are linked below as supplementary files.
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