Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(66)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(4)		   GeneChip
(6,935)		   Tiling Array
(4,286)		   cDNA Array
(7,649)		   Oligo Array
(13,277)		   Bead Array
(406)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(6)		   HT-Seq
(4,700)		   Other
(9)		   All
(37,338)		  
  brain
(0)		   blood
(0)		   connective
(0)		   reproductive
(0)		   muscular
(0)		   digestive
(0)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(0)		   embryo
(0)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(4)		   unclassified
(0)		   all
(4)		  
Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM83050 hybrid_5X3_6days 28,741 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F3M5_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F3M5_ful01.3358F.b 8/8/2002 593744 16306 QC Passed Oyst.F3M5_ful01.3358F.a 8/8/2002 651271 17662 QC Passed Oyst.F3M5_ful01.3358T.a 8/8/2002 531946 18009 QC Passed Oyst.F3M5_ful01.3358T.b 8/8/2002 491956 15885 QC Passed Run group: Total Beads successfully sequenced - 1826157 Total Distinct Signatures - 22954
2 GSM83048 parent_3X3_6days 27,446 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F3M3_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F3M3_ful01.3357F.a 8/9/2002 598046 19292 QC Passed Oyst.F3M3_ful01.3357T.b 8/9/2002 577307 22128 QC Passed Oyst.F3M3_ful01.3357F.c 8/9/2002 559781 19636 QC Passed Run group: Total Beads successfully sequenced - 1735134 Total Distinct Signatures - 27446
3 GSM83049 parent_5X5_6days 25,553 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F5M5_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F5M5_ful01.3359F.b 8/8/2002 705467 19897 QC Passed Oyst.F5M5_ful01.3359F.a 8/8/2002 681356 21191 QC Passed Oyst.F5M5_ful01.3359T.a 8/8/2002 555701 17618 QC Passed Oyst.F5M5_ful01.3359T.b 8/8/2002 499852 19303 QC Passed Run group: Total Beads successfully sequenced - 2442376 Total Distinct Signatures - 25553
4 GSM83051 hybrid_3X5_6days 22,954 Solexa, Inc. 2005-11-10 [MPSS] oyster MPSS (GPL3062) MPSS Crassostrea gigas
Crassostrea gigas		 pooled whole organism: Library Oyst.F5M3_ful01 Oysters larvae Age: 6 days Sex: undifferentiated cDNA library: Library DpnII restriction - (classic MPSS, cloning DpnII to poly A fragment) Sequence length 17 bp MPSS: runs Oyst.F5M3_ful01.3364T.b 8/9/2002 462881 21213 QC Passed Oyst.F5M3_ful01.3364F.b 8/9/2002 586917 24163 QC Passed Oyst.F5M3_ful01.3364F.a 8/9/2002 556938 21709 QC Passed Oyst.F5M3_ful01.3364T.a 8/9/2002 544843 23102 QC Passed Run group: Total Beads successfully sequenced - 2151579 Total Distinct Signatures - 28741
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