Gene Expression Omnibus (GEO) Overview Version:2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(615,734)
  Primates
(5,814)
  Rodents
(225,055)
  Mammals
(20,968)
  Vertebrates
(22,581)
  Invertebrates
(46,584)
  Plants
(107,706)
  Bacteria
(45,091)
  Viruses
(1,432)
  Phages
(112)
  Unclassified
(6,986)
  All
(1,101,311)
 
  SAGE NlaIII
(67)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(4)
  GeneChip
(7,893)
  Tiling Array
(4,519)
  cDNA Array
(8,269)
  Oligo Array
(16,507)
  Bead Array
(406)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(6)
  HT-Seq
(8,851)
  Other
(9)
  All
(46,584)
 
  brain
(2)
  blood
(3)
  connective
(0)
  reproductive
(6)
  muscular
(1)
  digestive
(7)
  liver
(0)
  lung
(0)
  urinary
(0)
  endo/exo-crine
(4)
  embryo
(7)
  adult aerial structure
(0)
  young aerial structure
(0)
  root
(0)
  meristem/growing tissue
(0)
  flower/sexual organ
(0)
  seed/fruit/grain
(0)
  pooled
(1)
  unclassified
(36)
  all
(67)
 
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM652443 LongSAGE Leishmania infantum chagasi 8,016 INSTITUTO DE DOENÇAS TROPICAIS NATAN PORTELLA 2011-01-10 [SAGE NlaIII] SAGE:17:NlaIII:Leishmania chagasi (GPL11414) SAGE Leishmania chagasi
Leishmania chagasi
unclassified source_name:Leishmania infantum chagasi promastigote cells title:LongSAGE Leishmania infantum chagasi description:leishmania infantum chagasi is the causative agent of visceral leishmaniasis in the New World.
2 GSM569313 Bombyx mori Posterior Silk Gland SAGE library 6,768 CNRS-University Lyon 1 2010-07-23 [SAGE NlaIII] SAGE:10:NlaIII:Bombyx mori (GPL2095) SAGE Bombyx mori
Bombyx mori
breast Posterior Silk Gland of Bombyx mori, fith instar, day 3
3 GSM569314 Bombyx mori Middle Silk Gland SAGE library 3,781 CNRS-University Lyon 1 2010-07-23 [SAGE NlaIII] SAGE:10:NlaIII:Bombyx mori (GPL2095) SAGE Bombyx mori
Bombyx mori
breast Middle Silk Gland of Bombyx mori, fith instar, day 3
4 GSM537746 Aedes aegypti salivary gland tags, following infection with dengue virus 199,635 Human Genomic Institut 2010-04-27 [SAGE NlaIII] SAGE:17:NlaIII:Aedes aegypti (GPL10360) SAGE Aedes aegypti
Aedes aegypti
salivary Aedes aegypti salivary gland tags, following infection with dengue virus
5 GSM537747 Aedes aegypti salivary gland tags 189,146 Human Genomic Institut 2010-04-27 [SAGE NlaIII] SAGE:17:NlaIII:Aedes aegypti (GPL10360) SAGE Aedes aegypti
Aedes aegypti
salivary Aedes aegypti salivary gland tags
6 GSM359519 SAGE Aedes aegypti, refractory, infected blood 6,063 University of Notre Dame 2009-01-12 [SAGE NlaIII] SAGE:10:NlaIII:Aedes aegypti (GPL8061) SAGE Aedes aegypti
Aedes aegypti
intestine midgut tissues, 3hrs, 6hrs, 12hrs, 24hrs, 48hrs, 72hrs and 96hrs after dengue-2 infectious blood meal
7 GSM359520 SAGE Aedes aegypti, susceptible, infected blood 5,818 University of Notre Dame 2009-01-12 [SAGE NlaIII] SAGE:10:NlaIII:Aedes aegypti (GPL8061) SAGE Aedes aegypti
Aedes aegypti
intestine midgut tissues, 3hrs, 6hrs, 12hrs, 24hrs, 48hrs, 72hrs and 96hrs after dengue-2 infectious blood meal
8 GSM359518 SAGE Aedes aegypti, susceptible, naive blood 3,423 University of Notre Dame 2009-01-12 [SAGE NlaIII] SAGE:10:NlaIII:Aedes aegypti (GPL8061) SAGE Aedes aegypti
Aedes aegypti
intestine midgut tissues, 3hrs, 6hrs, 12hrs, 24hrs, 48hrs, 72hrs and 96hrs after naive blood meal
9 GSM359517 SAGE Aedes aegypti, refractory, naive blood 3,025 University of Notre Dame 2009-01-12 [SAGE NlaIII] SAGE:10:NlaIII:Aedes aegypti (GPL8061) SAGE Aedes aegypti
Aedes aegypti
intestine midgut tissues, 3hrs, 6hrs, 12hrs, 24hrs, 48hrs, 72hrs and 96hrs after naive blood meal
10 GSM359510 SAGE Aedes aegypti, susceptible and refractory, sucrose 2,799 University of Notre Dame 2009-01-12 [SAGE NlaIII] SAGE:10:NlaIII:Aedes aegypti (GPL8061) SAGE Aedes aegypti
Aedes aegypti
intestine midgut tissues: 3hrs, 6hrs, 12hrs, 24hrs, 48hrs, 72hrs and 96hrs after sucrose meal
11 GSM304530 Dictyostelium discoideum amoeba stage SAGE library 3,414 Idaho State University 2008-07-09 [SAGE NlaIII] SAGE:10:NlaIII:Dictyostelium discoideum (GPL7037) SAGE Dictyostelium discoideum
Dictyostelium discoideum
unclassified source_name:Dictyostelium discoideum amoeba title:Dictyostelium discoideum amoeba stage SAGE library description:Reduce the amount of 26 bp ditags in concatemer ligation by 25%
12 GSM282623 Leishmania donovani axenic amastigotes 7,835 Shanghai Jiao Tong University 2008-04-18 [SAGE NlaIII] SAGE:10:NlaIII:Leishmania donovani (GPL3252) SAGE Leishmania donovani
Leishmania donovani
unclassified source_name:Leishmania donovani title:Leishmania donovani axenic amastigotes description:Amastigotes were cultured in a 95% air:5% CO2 humid atmosphere ratio in Medium 199 supplemented with 20% (V/V) FBS, pH 5.5, 37℃.
13 GSM264128 Metacyclic Leishmanaia major parasites 9,530 Institut Pasteur de Tunis 2008-02-07 [SAGE NlaIII] SAGE:10:NlaIII:Leishmania major (GPL6471) SAGE Leishmania major
Leishmania major
unclassified source_name:Metacyclic Leishmania major parasites title:Metacyclic Leishmanaia major parasites description:Metacyclic Leishmanaia major parasites
14 GSM255664 Munoz_OP_untreated 7,806 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
15 GSM255665 San Roman_OP_treated 7,714 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
16 GSM255666 San Roman_OP_untreated 6,095 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
17 GSM255662 Munoz_OP_treated 6,030 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus
unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
18 GSM249492 Ovary Babesia Infected (6 hours) B. microplus 5,315 USDA 2007-12-13 [SAGE NlaIII] SAGE:17:NlaIII:Rhipicephalus microplus (GPL6274) SAGE Rhipicephalus microplus
Rhipicephalus microplus
ovary B. microplus Adult ovary tissue
19 GSM249490 Ovary control(time zero) B. microplus 3,933 USDA 2007-12-13 [SAGE NlaIII] SAGE:17:NlaIII:Rhipicephalus microplus (GPL6274) SAGE Rhipicephalus microplus
Rhipicephalus microplus
ovary Adult Ovary [B. microplus]
20 GSM245722 6 day sporocysts (conditioned) 20,361 Andrew McArthur Consulting 2007-11-28 [SAGE NlaIII] SAGE:17:NlaIII:Schistosoma mansoni (GPL5463) SAGE Schistosoma mansoni
Schistosoma mansoni
unclassified source_name:Schistosoma mansoni 6 day sporocysts, conditioned title:6 day sporocysts (conditioned) description:Recombinant pGEM3Z clones produced by SAGE were purified using GeneMachines RevPrep Orbit (San Carlos, CA) and were sequenced on an ABI 3730xl DNA sequencer (Applied Biosystems, Foster City, CA).
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