Gene Expression Omnibus (GEO) Overview Version：2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(502,421)		   Primates
(4,928)		   Rodents
(181,106)		   Mammals
(16,260)		   Vertebrates
(18,263)		   Invertebrates
(37,338)		   Plants
(91,454)		   Bacteria
(39,082)		   Viruses
(1,266)		   Phages
(101)		   Unclassified
(5,242)		   All
(898,944)		  
  SAGE NlaIII
(66)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(4)		   GeneChip
(6,935)		   Tiling Array
(4,286)		   cDNA Array
(7,649)		   Oligo Array
(13,277)		   Bead Array
(406)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(6)		   HT-Seq
(4,700)		   Other
(9)		   All
(37,338)		  
  brain
(2)		   blood
(3)		   connective
(0)		   reproductive
(6)		   muscular
(1)		   digestive
(2)		   liver
(0)		   lung
(0)		   urinary
(0)		   endo/exo-crine
(4)		   embryo
(7)		   adult aerial structure
(0)		   young aerial structure
(0)		   root
(0)		   meristem/growing tissue
(0)		   flower/sexual organ
(0)		   seed/fruit/grain
(0)		   pooled
(1)		   unclassified
(40)		   all
(66)		  
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Sample ID Title Number of Data Institute Submission date Platform Sample type Species Organ class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GSM60839 SAGE_Drosophila pseudoobscura_Male 7,672 Veterinärmedizinische Universität Wien 2005-06-13 [SAGE NlaIII] SAGE:10:NlaIII:Drosophila pseudoobscura (GPL2537) SAGE Drosophila pseudoobscura
Drosophila pseudoobscura		 unclassified source_name:male flies title:SAGE_Drosophila pseudoobscura_Male description:The mRNA was isolated from total RNA using a biotin-labeled Tn oligo and Dynal beads. Double stranded cDNA was generated with Superscript II reverse transcriptase and DNA polymerase I. The resulting cDNA library was digested with NlaIII (anchoring enzyme). 3’ restriction fragments were recovered with Dynal beads and split into two populations. Each aliquot was ligated to one of the two annealed linker pairs. After extensive washing tags were created by digestion with BsmFI (tagging enzyme). Tags were blunted with T4 polymerase and ligated to generate ditags. Ditags were PCR amplified and digested with NlaIII. Restriction fragments were separated on a 12% polyacrylamide gel and the band containing the ditags was isolated from the gel. The purified inserts were concatemerized and ligated into pZero and transformed into EDH5? electromax cells.
2 GSM60840 SAGE_Drosophila pseudoobscura_Female 7,486 Veterinärmedizinische Universität Wien 2005-06-13 [SAGE NlaIII] SAGE:10:NlaIII:Drosophila pseudoobscura (GPL2537) SAGE Drosophila pseudoobscura
Drosophila pseudoobscura		 unclassified source_name:female flies title:SAGE_Drosophila pseudoobscura_Female description:The mRNA was isolated from total RNA using a biotin-labeled Tn oligo and Dynal beads. Double stranded cDNA was generated with Superscript II reverse transcriptase and DNA polymerase I. The resulting cDNA library was digested with NlaIII (anchoring enzyme). 3’ restriction fragments were recovered with Dynal beads and split into two populations. Each aliquot was ligated to one of the two annealed linker pairs. After extensive washing tags were created by digestion with BsmFI (tagging enzyme). Tags were blunted with T4 polymerase and ligated to generate ditags. Ditags were PCR amplified and digested with NlaIII. Restriction fragments were separated on a 12% polyacrylamide gel and the band containing the ditags was isolated from the gel. The purified inserts were concatemerized and ligated into pZero and transformed into EDH5? electromax cells.
3 GSM255664 Munoz_OP_untreated 7,806 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus		 unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
4 GSM255665 San Roman_OP_treated 7,714 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus		 unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
5 GSM255666 San Roman_OP_untreated 6,095 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus		 unclassified source_name:San Roman_f18 generation_12-16 days old larvae title:San Roman_OP_untreated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
6 GSM255662 Munoz_OP_treated 6,030 USDA 2008-01-08 [SAGE NlaIII] SAGE:10:NlaIII:Rhipicephalus microplus (GPL6351) SAGE Rhipicephalus microplus
Rhipicephalus microplus		 unclassified source_name:Munoz stratin_f13 generation_12-16d old larvae title:Munoz_OP_treated description:For more details see: Insect Molecular Biology (2007) 16(1), 49-60.
7 GSM249492 Ovary Babesia Infected (6 hours) B. microplus 5,315 USDA 2007-12-13 [SAGE NlaIII] SAGE:17:NlaIII:Rhipicephalus microplus (GPL6274) SAGE Rhipicephalus microplus
Rhipicephalus microplus		 ovary B. microplus Adult ovary tissue
8 GSM249490 Ovary control(time zero) B. microplus 3,933 USDA 2007-12-13 [SAGE NlaIII] SAGE:17:NlaIII:Rhipicephalus microplus (GPL6274) SAGE Rhipicephalus microplus
Rhipicephalus microplus		 ovary Adult Ovary [B. microplus]
9 GSM109148 Grass Shrimp Endosulfan-exposed Library 5,286 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemonetes pugio
Palaemonetes pugio		 unclassified source_name:Grass shrimp Endosulfan-exposed title:Grass Shrimp Endosulfan-exposed Library description:This library was constructed from Endosulfan-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
10 GSM109146 Grass Shrimp Control Library 4,814 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemonetes pugio
Palaemonetes pugio		 unclassified source_name:Grass shrimp control title:Grass Shrimp Control Library description:This library was constructed from control shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
11 GSM109150 Grass Shrimp Cadmium-exposed Library 4,519 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemonetes pugio
Palaemonetes pugio		 unclassified source_name:Grass shrimp Cadmium-exposed title:Grass Shrimp Cadmium-exposed Library description:This library was constructed from Cadmium-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
12 GSM109147 Grass Shrimp Fipronil-exposed Library 3,189 University of Southern Mississippi 2006-05-16 [SAGE NlaIII] SAGE:17:NlaIII:Palaemonetes pugio (GPL3770) SAGE Palaemonetes pugio
Palaemonetes pugio		 unclassified source_name:Grass shrimp Fipronil-exposed title:Grass Shrimp Fipronil-exposed Library description:This library was constructed from Fipronil-exposed shrimp in an exposure to identify differentially expressed genes in shrimp following exposure to fipronil, endosulfan, or cadmium.
13 GSM119465 Bombyx ovary SAGE library #1 40,311 The University of Tokyo 2006-07-10 [SAGE NlaIII] SAGE:16:NlaIII:Bombyx mori (GPL3984) SAGE Bombyx mori
Bombyx mori		 ovary ovary (stage1-stage3)
14 GSM119467 Bombyx ovary SAGE library #2 16,740 The University of Tokyo 2006-07-10 [SAGE NlaIII] SAGE:16:NlaIII:Bombyx mori (GPL3984) SAGE Bombyx mori
Bombyx mori		 ovary ovary (stage2-3)
15 GSM87437 Leishmania donovani promastigotes 8,615 Shanghai Jiao Tong University 2005-12-12 [SAGE NlaIII] SAGE:10:NlaIII:Leishmania donovani (GPL3252) SAGE Leishmania donovani
Leishmania donovani		 peripheral blood L. donovani promastigotes were routinely cultured at 22℃ in M199 medium(pH 7.4) supplemented with 10% heat-inactivated fetal bovine serum
16 GSM282623 Leishmania donovani axenic amastigotes 7,835 Shanghai Jiao Tong University 2008-04-18 [SAGE NlaIII] SAGE:10:NlaIII:Leishmania donovani (GPL3252) SAGE Leishmania donovani
Leishmania donovani		 unclassified source_name:Leishmania donovani title:Leishmania donovani axenic amastigotes description:Amastigotes were cultured in a 95% air:5% CO2 humid atmosphere ratio in Medium 199 supplemented with 20% (V/V) FBS, pH 5.5, 37℃.
17 GSM51910 SAGE library generated from normal Bombyx. mori embryos 17,718 Shanghai Institute of Plant Physiology ang Ecology 2005-05-19 [SAGE NlaIII] SAGE:10:NlaIII:Bombyx mori (GPL2095) SAGE Bombyx mori
Bombyx mori		 embryo mix of the developing embryos
18 GSM51912 radiation treated Bombyx Mori developing embryos 15,531 Shanghai Institute of Plant Physiology ang Ecology 2005-05-19 [SAGE NlaIII] SAGE:10:NlaIII:Bombyx mori (GPL2095) SAGE Bombyx mori
Bombyx mori		 embryo mix of the radiation developing embryos
19 GSM652443 LongSAGE Leishmania infantum chagasi 8,016 INSTITUTO DE DOENÇAS TROPICAIS NATAN PORTELLA 2011-01-10 [SAGE NlaIII] SAGE:17:NlaIII:Leishmania chagasi (GPL11414) SAGE Leishmania chagasi
Leishmania chagasi		 unclassified source_name:Leishmania infantum chagasi promastigote cells title:LongSAGE Leishmania infantum chagasi description:leishmania infantum chagasi is the causative agent of visceral leishmaniasis in the New World.
20 GSM264128 Metacyclic Leishmanaia major parasites 9,530 Institut Pasteur de Tunis 2008-02-07 [SAGE NlaIII] SAGE:10:NlaIII:Leishmania major (GPL6471) SAGE Leishmania major
Leishmania major		 unclassified source_name:Metacyclic Leishmania major parasites title:Metacyclic Leishmanaia major parasites description:Metacyclic Leishmanaia major parasites
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