Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(106)		   Primates
(0)		   Rodents
(47)		   Mammals
(28)		   Vertebrates
(11)		   Invertebrates
(19)		   Plants
(73)		   Bacteria
(31)		   Viruses
(0)		   Phages
(0)		   Unclassified
(5)		   All
(322)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(0)		   Tiling Array
(2)		   cDNA Array
(6)		   Oligo Array
(11)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(0)		   All
(19)		  
Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL8305 Toxoplasma gondii ChIP-chip genome-wide tiling array 751,209 CNRS 2009-03-16 Nimblegen Toxoplasma gondii ME49
Toxoplasma gondii ME49		 Tiling Array in situ oligonucleotide, Toxoplasma gondii ChIP-chip genome-wide tiling array, Tiling microarray encompassing 65 Mb of Toxoplasma gondii (strain ME49) genome (chromosomes Ia, Ib, II, III, IV, V, VIIa, VIIb, VIII, IX, X, XI and XII). RefSeq genome accession: NZ_ABPA00000000.1. 50mer probes selected at 82 bp interval spacing From : TOXODB release 4.0 Genomic sequence available at: http://toxodb.org/common/downloads/release-4.0/ Native NimbleGen files (ndf, pos) are linked below as supplementary files.
2 GPL10867 2007-03-13_Henikoff_Dros_ChIP_1 384,767 Institute of Human Genetics 2010-08-31 NimbleGen Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, 2007-03-13_Henikoff_Dros_ChIP_1, Tiling array mapping euchromatic regions of the Drosophila melanogaster genome (Flybase release 4). Chip 1 of 3 of a NimbleGen platform (DesignID=5385) originally designed by Henikoff and Mito (GEO accession: GPL3352). Whole chromosome 3R mapped with 219005 isothermal probes with an average oligonucleotide length of 50bp and an average inter-oligo spacing of 120bp. The 3R chromosome sequence was unchanged from FlyBase release 4 to FlyBase release 5 and thus release 4 coordinates also corresponds to release 5 coordinates for this chromosome. Other probes provide dense tiling of Chr 2L proximal, Chr X proximal and distal, first part of Chr 4, and Bithorax complex (BXC1).
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