Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(18,625)		   Primates
(206)		   Rodents
(12,612)		   Mammals
(782)		   Vertebrates
(1,156)		   Invertebrates
(4,045)		   Plants
(6,642)		   Bacteria
(2,980)		   Viruses
(50)		   Phages
(4)		   Unclassified
(287)		   All
(47,440)		  
  SAGE NlaIII
(19)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(1)		   GeneChip
(503)		   Tiling Array
(1,119)		   cDNA Array
(471)		   Oligo Array
(838)		   Bead Array
(3)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(2)		   HT-Seq
(1,084)		   Other
(5)		   All
(4,045)		  
1   |   2   |   3   |   4   |   5      »      [203]
Title Platform Institute Submission date Species Data size
(probes x samples)		 Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 High-throughput sequencing of small RNAs: Caenorhabditis elegans (GSE11738) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 179,289,920
(11,205,620 x 16) 		1 15 by_platform
by_series
2 Broad chromosomal domains of histone modification patterns in C. elegans (GSE26186) [Tiling Array] 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 (GPL8647) Ontario Institute for Cancer Research 2010-12-20 Caenorhabditis elegans
Caenorhabditis elegans		 160,650,000
(2,142,000 x 75) 		10 1 64 by_platform
by_series
3 Developmental timecourse of C. elegans small RNAs with 5p monophosphates (GSE11734) [HT Sequencing] MIT Caenorhabditis elegans small RNA sequences (Illumina/Solexa) (GPL6946) UCSF 2008-06-10 Caenorhabditis elegans
Caenorhabditis elegans		 100,850,580
(11,205,620 x 9) 		1 8 by_platform
by_series
4 Genome-wide profiling of salt fractions maps physical properties of chromatin (GSE13217) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) Fred Hutchinson Cancer Research Center 2008-10-15 Drosophila melanogaster
Drosophila melanogaster		 97,981,012
(2,130,022 x 46) 		46 by_platform
by_series
5 An MLL/COMPASS subunit functions in the C. elegans dosage compensation complex to target X chromosomes for transcriptional regulation of gene expression (GSE25834) [Oligo Array] NimbleGen 071121_Celegans180_ChIP03_design_ID_6737 (GPL8134) HHMI/UCB 2010-12-03 Caenorhabditis elegans
Caenorhabditis elegans		 95,589,211
(2,033,813 x 47) 		45 2 by_platform
by_series
6 Examination of DPY-30, DPY-27, SDC-3, DPY-26, MIX-1, SMC-4, ASH-2, RNA Polymerase II binding in wild type and DCC mutant embryos (GSE25833) [Oligo Array] NimbleGen 071121_Celegans180_ChIP03_design_ID_6737 (GPL8134) HHMI/UCB 2010-12-03 Caenorhabditis elegans
Caenorhabditis elegans		 89,487,772
(2,033,813 x 44) 		44 by_platform
by_series
7 ChIP-chip time-course from DmD8 cells with Pol II (Ser 2 and Ser 5 phosphorylated) antibody or Su(H) antibody after Notch activation (GSE35720) [Tiling Array] NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725] (GPL15057) University of Cambridge 2012-02-10 Drosophila melanogaster
Drosophila melanogaster		 88,472,588
(2,157,868 x 41) 		41 by_platform
by_series
8 Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq (GSE15292) [Oligo Array] Agilent-019182 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 3 (GPL6949) The University of Chicago 2009-03-19 Drosophila melanogaster
Drosophila melanogaster		 65,746,080
(243,504 x 270) 		78 192 by_platform
by_series
9 Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq (GSE15292) [Oligo Array] Agilent-019183 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 3 (GPL6950) The University of Chicago 2009-03-19 Drosophila melanogaster
Drosophila melanogaster		 65,746,080
(243,504 x 270) 		78 192 by_platform
by_series
10 Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq (GSE15292) [Oligo Array] Agilent-019184 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 3 of 3 (GPL6951) The University of Chicago 2009-03-19 Drosophila melanogaster
Drosophila melanogaster		 65,746,080
(243,504 x 270) 		78 192 by_platform
by_series
11 A major genome region underlying artemisinin resistance in malaria (GSE33002) [Oligo Array] NimbleGen Pfalciparum 720K 1.0 (GPL13355) University of Notre Dame 2011-10-14 Plasmodium falciparum
Plasmodium falciparum		 59,419,101
(355,803 x 167) 		167 by_platform
by_series
12 Protein profiling reveals five principal chromatin types in Drosophila cells (GSE22069) [Oligo Array] NimbleGen Drosophila 385k array rel4 300bp (GPL8471) Netherlands Cancer Institute 2010-06-01 Drosophila melanogaster
Drosophila melanogaster		 46,970,000
(385,000 x 122) 		122 by_platform
by_series
13 ChIP-chip time-course from DmD8 cells with Pol II (Ser 2 and Ser 5 phosphorylated) antibody after 0, 10, 20, 30 40, 60 and 100 minutes Notch activation (GSE35715) [Tiling Array] NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725] (GPL15057) University of Cambridge 2012-02-10 Drosophila melanogaster
Drosophila melanogaster		 45,315,228
(2,157,868 x 21) 		21 by_platform
by_series
14 Natural selection shapes genome wide patterns of copy number polymorphism in D. melanogaster (GSE11326) [Tiling Array] Affymetrix Drosophila Genome Tiling Array 1.0F (Dm35b_MF_v02) (GPL6882) University of Chicago 2008-05-02 Drosophila melanogaster
Drosophila melanogaster		 45,150,375
(3,010,025 x 15) 		15 by_platform
by_series
15 Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation: ChIP-chip data (GSE20471) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) NIH/NIEHS 2010-02-22 Drosophila melanogaster
Drosophila melanogaster		 44,730,462
(2,130,022 x 21) 		2 19 by_platform
by_series
16 Pausing of RNA polymerase II disrupts DNA-specified nucleosome organization to enable precise gene regulation (GSE20472) [Tiling Array] Henikoff_Dmel_r52_ChIP tiling design (GPL6888) NIH/NIEHS 2010-02-22 Drosophila melanogaster
Drosophila melanogaster		 44,730,462
(2,130,022 x 21) 		2 19 by_platform
by_series
17 ChIP-chip time-course from DmD8 cells with Su(H) antibody after 0, 10, 20, 30 40, 60 and 100 minutes Notch activation (GSE35719) [Tiling Array] NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array [DesignID: 6725] (GPL15057) University of Cambridge 2012-02-10 Drosophila melanogaster
Drosophila melanogaster		 43,157,360
(2,157,868 x 20) 		20 by_platform
by_series
18 Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2 (GSE25933) [Tiling Array] 080922_modEncode_Caenorhabditis elegans_2M tiling chip_HX1 (GPL8647) Ontario Institute for Cancer Research 2010-12-08 Caenorhabditis elegans
Caenorhabditis elegans		 42,840,000
(2,142,000 x 20) 		20 by_platform
by_series
19 A network model of the molecular organization of chromatin in Drosophila (GSE36175) [Oligo Array] NimbleGen Drosophila 385k array rel4 300bp (GPL8471) Netherlands Cancer Institute 2012-02-29 Drosophila melanogaster
Drosophila melanogaster		 41,580,000
(385,000 x 108) 		108 by_platform
by_series
20 Transcriptome Microarray Gene Expression Analysis of Heliconius butterfly forewing and hindwing tissues across pupal development reveals genes underlying wing pattern variation (GSE38084) [Oligo Array] NimbleGen 090807 H. erato tile and expr HX12 V1.0 (GPL13769) North Carolina State University 2012-05-21 Heliconius erato petiverana
Heliconius erato petiverana		 40,455,576
(137,604 x 294) 		294 by_platform
by_series
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