Gene Expression Omnibus (GEO) Overview Version´╝Ü2014-04-12Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(103)
  Primates
(4)
  Rodents
(40)
  Mammals
(13)
  Vertebrates
(32)
  Invertebrates
(30)
  Plants
(76)
  Bacteria
(73)
  Viruses
(4)
  Phages
(0)
  Unclassified
(19)
  All
(394)
 
  SAGE NlaIII
(0)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(0)
  GeneChip
(1)
  Tiling Array
(0)
  cDNA Array
(3)
  Oligo Array
(13)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(0)
  HT-Seq
(12)
  Other
(1)
  All
(30)
 
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL10125 Nimblegen Rhipicephalus microplus 385K microarray 385,770 DEEDI 2010-03-03 NimbleGen Systems Inc. Rhipicephalus microplus
Rhipicephalus microplus
Oligo Array in situ oligonucleotide, Nimblegen Rhipicephalus microplus 385K microarray,
2 GPL10171 Agilent-015554 RSTA Purple sea urchin 244K v.2.0 238,389 Stanford University 2010-03-12 Agilent Technologies Inc. Strongylocentrotus purpuratus
Strongylocentrotus purpuratus
Oligo Array in situ oligonucleotide, Agilent-015554 RSTA Purple sea urchin 244K v.2.0,
3 GPL10018 Agilent Daphnia magna 4x44k oligonucleotide array 45,220 UMass Boston 2010-02-05 Agilent Technologies Daphnia magna
Daphnia magna
Oligo Array in situ oligonucleotide, Agilent Daphnia magna 4x44k oligonucleotide array, AMDID#:020740 ONLY CLONES OF INTEREST HAVE BEEN IDENTIFIED WITH GENBANK ACCESSION NUMBER.
4 GPL10094 Agilent-020186 C. elegans (V2) Gene Expression Microarray (Feature Number version) 45,220 Agilent Technologies 2010-02-22 Agilent Technologies Caenorhabditis elegans
Caenorhabditis elegans
Oligo Array in situ oligonucleotide, Agilent-020186 C. elegans (V2) Gene Expression Microarray (Feature Number version), Caenorhabditis elegans (Nematode) Oligo Microarray Arrays of this design have barcodes that begin with 16020186 or 2520186. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11346
5 GPL10103 Agilent-019315 Sarcophaga crassipalpis custom cDNA array 45,220 University of Florida 2010-02-25 Agilent Sarcophaga crassipalpis
Sarcophaga crassipalpis
Oligo Array in situ oligonucleotide, Agilent-019315 Sarcophaga crassipalpis custom cDNA array, Probesets: UF_Scr_NF_100001 to UF_Scr_NF_100103: four forward probes for each NCBI record of Sarcophaga crassipalpis genes Probesets: UF_Scr_NM_100104 to UF_Scr_NM_100206: four reverse (minus strand) probes for each NCBI Sarcophaga crassipalpis record Probesets: UF_Scr_AF_100207 to UF_Scr_AF_123337: two forward probes for each annotated S. crassipalpis EST Probesets: UF_Scr_AM_123338 to UF_Scr_AM_134993: one reverese (minus strand) probe for each annotated S. crassipalpis EST Probesets: UF_Scr_UN_134994 from UF_Scr_UN_145629: one forward probe for each unannotated S. crassipalpis EST
6 GPL10111 Agilent-025188 Custom Agilent Myzus Persicae Array 45,220 Rothamsted Research 2010-02-26 Agilent Myzus persicae
Myzus persicae
Oligo Array in situ oligonucleotide, Agilent-025188 Custom Agilent Myzus Persicae Array, All sequences on which the array probes are designed are publically available at http://www.aphidbase.com/aphidbase/downloads under Myzus454(fasta) and MyzusSanger(fasta).
7 GPL10238 Cardiff Caenorhabditis elegans 20K oligo array (Operon oligonucleotide set version 1.1) 19,873 Cardiff University 2010-03-22 Cardiff School of Bioscience, Cardiff University Caenorhabditis elegans
Caenorhabditis elegans
Oligo Array spotted oligonucleotide, Cardiff Caenorhabditis elegans 20K oligo array (Operon oligonucleotide set version 1.1), Created from Operon C. elegans oligonucleotide set version 1.1. 60-65mer oligonuleotides.
8 GPL10075 UMDNJ Trypanosoma brucei 19K 19,200 University of Medicine and Dentistry of New Jersey-New Jersey Medical School 2010-02-19 Pathogen Functional Genomic Resources Center Trypanosoma brucei
Trypanosoma brucei
Oligo Array spotted oligonucleotide, UMDNJ Trypanosoma brucei 19K, Pathogen Functional Genomics Resource Center Trypanosoma brucei version 3 70mer oligonucleotide 2x replicate oligo printing
9 GPL10221 JCVI PFGRC Trypanosoma brucei 19K v4 array designed primarily based on strain TREU927 9,094 J. Craig Venter Institute 2010-03-17 JCVI PFGRC Trypanosoma brucei
Trypanosoma brucei
Oligo Array spotted oligonucleotide, JCVI PFGRC Trypanosoma brucei 19K v4 array designed primarily based on strain TREU927, This set includes 8375 oligonucleotides, has 19200 spots distributed in 48 blocks.
10 GPL10000 [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5) 7,253 University of Pennsylvania 2010-02-02 Affymetrix Toxoplasma gondii
Toxoplasma gondii
GeneChip in situ oligonucleotide, [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5), Affymetrix custom CDF [Tgondiia520372]
11 GPL10014 UWBMC Armigeres subalbatus 18K v1.0 6,143 University of Wisconsin-Madison 2010-02-04 University of Wisconsin Gene Expression Center Armigeres subalbatus
Armigeres subalbatus
Oligo Array spotted oligonucleotide, UWBMC Armigeres subalbatus 18K v1.0,
12 GPL10255 UCSB/Hofmann Mytilus californianus 5K v1.0 4,992 University of South Carolina 2010-03-26 Oregon State University - Center for Genome Research and Biocomputing Mytilus californianus
Mytilus californianus
cDNA Array spotted DNA/cDNA, UCSB/Hofmann Mytilus californianus 5K v1.0,
13 GPL10269 Mussel MytArray 1.1 4,560 University of Padova 2010-03-30 C.R.I.B.I.-Biotechnology Centre and Dept. Biology (University of Padova) Mytilus galloprovincialis
Mytilus galloprovincialis
cDNA Array spotted DNA/cDNA, Mussel MytArray 1.1,
14 GPL10043 Tdalmanni Agilent 44K Oligoarray CGH slide 3,698 University of Maryland 2010-02-12 Agilent Teleopsis dalmanni
Teleopsis dalmanni
Oligo Array in situ oligonucleotide, Tdalmanni Agilent 44K Oligoarray CGH slide,
15 GPL9992 Chiton 4x2K array 2,240 Queensland University of Technology 2010-01-29 Combimatrix Acanthopleura hirtosa
Acanthopleura hirtosa
Oligo Array in situ oligonucleotide, Chiton 4x2K array,
16 GPL10244 Acropora palmata 2K EST array 2,051 University of North Carolina, Wilmington 2010-03-23 University of California, Merced Acropora palmata
Acropora palmata
cDNA Array spotted DNA/cDNA, Acropora palmata 2K EST array,
17 GPL9993 UMR BiO3P-INRA Acyrthosiphon pisum 0.4K miRNAs v1 363 INRA 2010-01-29 LC-Sciences Acyrthosiphon pisum
Acyrthosiphon pisum
Oligo Array spotted oligonucleotide, UMR BiO3P-INRA Acyrthosiphon pisum 0.4K miRNAs v1,
18 GPL9968 Allergochip for asthma diagnosis 103 University of Perugia 2010-01-24 Crisanti's Lab-Imperial College Dermatophagoides pteronyssinus
Dermatophagoides pteronyssinus
Other spotted peptide or protein, Allergochip for asthma diagnosis,
19 GPL10061 Illumina Genome Analyzer II (Drosophila yakuba) 0 2010-02-17 Drosophila yakuba
Drosophila yakuba
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Drosophila yakuba),
20 GPL10069 Illumina Genome Analyzer II (Drosophila melanogaster x Drosophila sechellia) 0 2010-02-19 Drosophila melanogaster x Drosophila sechellia
Drosophila melanogaster x Drosophila sechellia
HT Sequencing high-throughput sequencing, Illumina Genome Analyzer II (Drosophila melanogaster x Drosophila sechellia),
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