| 1 |
GPL7107 |
Adolf Butenandt Institute Drosophila melanogaster 385K Tiling Array version 1 |
384,688 |
Adolf Butenandt Institute |
2008-07-29 |
NimbleGen Systems Inc. |
Drosophila melanogaster
 |
Tiling Array |
in situ oligonucleotide, Adolf Butenandt Institute Drosophila melanogaster 385K Tiling Array version 1, All of chr X, parts of 2L, 2R, 3L and 3R. Based on dm2/FlyBase release 4.3. isothermal probe design, about 1 probe/100 bases. 2006-02-16_Becker_DMEL_ChIP tiling design |
| 2 |
GPL7285 |
NimbleGen DMEL ChiP Set 1 of 3 |
382,343 |
Justus-Liebig-University Giessen |
2008-09-11 |
Roche NimbleGen |
Drosophila melanogaster
|
Oligo Array |
spotted oligonucleotide, NimbleGen DMEL ChiP Set 1 of 3, |
| 3 |
GPL7286 |
NimbleGen DMEL ChiP Set 2 of 3 |
382,343 |
Justus-Liebig-University Giessen |
2008-09-11 |
Roche NimbleGen |
Drosophila melanogaster
|
Oligo Array |
spotted oligonucleotide, NimbleGen DMEL ChiP Set 2 of 3, |
| 4 |
GPL7287 |
NimbleGen DMEL ChiP Set 3 of 3 |
382,342 |
Justus-Liebig-University Giessen |
2008-09-11 |
Roche NimbleGen |
Drosophila melanogaster
|
Oligo Array |
spotted oligonucleotide, NimbleGen DMEL ChiP Set 3 of 3, |
| 5 |
GPL14372 |
Agilent-025090 P.pacificus-version2 |
105,072 |
Max Planck Institute for Developmental Biology |
2011-09-02 |
Agilent Technologies |
Pristionchus pacificus
 |
Oligo Array |
in situ oligonucleotide, Agilent-025090 P.pacificus-version2, P.pacificus transcriptome version 2 : 2009-08-13 Arrays of this design have barcodes that begin with 16025090 or 2525090. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 6 |
GPL517 |
Heidelberg FlyArray |
47,616 |
Deutsches Krebsforschungszentrum |
2003-10-02 |
|
Drosophila melanogaster
|
cDNA Array |
spotted DNA/cDNA, Heidelberg FlyArray, cDNA Microarray from spotted PCR products containing 47,616 features from Drosophila melanogaster and various controls. Primer design was made with GenomePride software. Average length is 500 bp within exonic sequence. Microarray construction The 2nd round PCR-product was spotted in 3x SSC, 150mM NaPO4, 1.5M betaine onto QMT Amino slides (Quantifoil, Jena, Germany) using a MicroGrid II arrayer (BioRobotics, Cambridge, UK) and SMP3 pins (TeleChem International Inc., Sunnyvale, USA). Each PCR-product was spotted twice at different positions on the microarray. As controls, PCR-products of Arabidopsis cDNAs, genomic Drosophila DNA and C. elegans cDNAs were spotted. The DNA was UV-crosslinked (250mJ/cm2) and baked for 4h at 80°C. In total, the Heidelberg FlyArray contains 47,616 features, representing the 21,306 ORF-amplicons and 2,502 controls. |
| 7 |
GPL14623 |
Agilent-029288 Hydra vulgaris 45J haep_celerav02_1.0 |
45,220 |
zoological institute Kiel |
2011-09-26 |
Agilent Technologies |
Hydra vulgaris
 |
Oligo Array |
in situ oligonucleotide, Agilent-029288 Hydra vulgaris 45J haep_celerav02_1.0, Hydra vulgaris (AEP) Arrays of this design have barcodes that begin with 16029288 or 2529288. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. |
| 8 |
GPL13217 |
Agilent Manduca sexta 37K |
37,175 |
Max Planck Institute for Chemical Ecology |
2011-02-23 |
Agilent |
Manduca sexta
 |
Oligo Array |
in situ oligonucleotide, Agilent Manduca sexta 37K, |
| 9 |
GPL3277 |
University of Cologne Dictyostelium discoideum 15K |
33,120 |
Institute for Biochemistry 1 |
2005-12-22 |
Institute for Biochemistry I, University of Cologne |
Dictyostelium discoideum
 |
cDNA Array |
spotted DNA/cDNA, University of Cologne Dictyostelium discoideum 15K, |
| 10 |
GPL1404 |
MJArray Fly |
32,448 |
Forschungszentrum Karlsruhe |
2004-08-11 |
|
Drosophila melanogaster
|
cDNA Array |
spotted DNA/cDNA, MJArray Fly, The array was assembled using amplicons that were obtained using the Incyte primer set. The set is identical to the one used to produce platform GPL20, primer sequences can be viewed in that platform. We included a reference to the ID of GPL20. The amplicons represent approximately 93% of the genes predicted in version 1.0 of the Drosophila genome from sequences released by the Berkeley Drosophila Genome Project and Celera Genomics in March 2000. The amplicons represent approximately 75% of the genes predicted in the January 2003 release 3.1 Drosophila genome annotation update. The regions amplified to build the array ranged in size from 150 to 600 bp with an average size of 410 bp. PCR fragments were amplified and each amplicon was quality control tested for DNA concentration, purity, and fragment size. A total of 11,796 reactions led to a single product of correct size and sufficient amount (marked as ok in column GENE_NAME). The 675 reactions that produced multiple products were run on a gel again and the band of the correct size was excised cloned into pCR TOPO 2.1 (Invitrogen). The 2034 reactions where no band was visible was also subjected to a 'blind' clone-attempt. Those 2709 cloning-reactions led to 2033 positive clones, that were included on the array and marked as 'clone!' in column GENE_NAME. Non sequence-verified clones were not included in the current study. A mixture of all these 2033 clones was used to make a titration dilution as a hybridisation control (Incyte Amplification Titration Standard, IATS) that is included in each of the 48 blocks of our array. Arrays were spotted with a Omnigrid 100 (GeneMachines) with 24 SMP3 pins (Telechem). By having two identical subarrays next to each other on each slide, we obtain 48 blocks with 26 rows and 26 columns each. Spot to spot spacing is 150 micron, average spot diameter is 100 micron. |
| 11 |
GPL2581 |
Drosophila Incyte arrays, Klebes/Kornberg v1 |
16,664 |
Ansgar Klebes |
2005-06-28 |
Klebes A and Kornberg TB |
Drosophila melanogaster
|
cDNA Array |
spotted DNA/cDNA, Drosophila Incyte arrays, Klebes/Kornberg v1, The array was assembled using amplicons representing approximately 93% of the genes predicted in version 1.0 of the Drosophila genome from sequences released by the Berkeley Drosophila Genome Project and Celera Genomics in March 2000. The amplicons represent approximately 75% of the genes predicted in the January 2003 release 3.1 Drosophila genome annotation update. Incyte in-house algorithms were used to develop gene-specific primers averaging 20 nucleotides in length that were used to PCR amplify one exon or exon fragment from every predicted gene in the fly genome. The regions amplified to build the array ranged in size from 150 to 600 bp with an average size of 410 bp. Additionally, non-Drosophila sequences (Adenovirus, GFP) were spotted for spiking controls, background control, and orientation purposes. Hybridized slides were read with a GenePix 4000A scanner (Axon Instruments, Foster City, CA). |
| 12 |
GPL1972 |
Dictyostelium discoideum cDNA Microarray 6000 |
15,552 |
Institute for Biochemistry 1 |
2005-04-19 |
|
Dictyostelium discoideum
|
cDNA Array |
spotted DNA/cDNA, Dictyostelium discoideum cDNA Microarray 6000, Spotted cDNAs array on glass. The current Dictyostelium DNA microarray carries approximately 5,400 non-redundant ESTs from the Dictyostelium cDNA project, partial sequences of 450 known genes and appropriate positive and negative controls" |
| 13 |
GPL17003 |
UHN Microarray Centre Drosophila melanogaster D14k3 |
8,369 |
University of Kiel, Germany |
2013-04-10 |
University Health Network Microarray Centre (www.microarrays,ca, Toronto, Canada) |
Drosophila melanogaster
|
Oligo Array |
spotted oligonucleotide, UHN Microarray Centre Drosophila melanogaster D14k3, |
| 14 |
GPL9699 |
LMU Drosophila ananassae 1.2K |
1,296 |
LMU |
2009-11-18 |
LMU Biocenter AG Parsch |
Drosophila ananassae
 |
cDNA Array |
spotted DNA/cDNA, LMU Drosophila ananassae 1.2K, |
|