Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(67)		   Primates
(1)		   Rodents
(38)		   Mammals
(3)		   Vertebrates
(10)		   Invertebrates
(67)		   Plants
(49)		   Bacteria
(32)		   Viruses
(0)		   Phages
(0)		   Unclassified
(8)		   All
(275)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(1)		   Tiling Array
(30)		   cDNA Array
(7)		   Oligo Array
(28)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(0)		   Other
(1)		   All
(67)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL4614 NimbleGen_DesignID3426_UNC_LiebLab tiling array 577,211 UNC-Chapel Hill 2006-11-30 NimbleGen Inc. Caenorhabditis elegans
Caenorhabditis elegans		 Tiling Array in situ oligonucleotide, NimbleGen_DesignID3426_UNC_LiebLab tiling array,
2 GPL4619 NimbleGen_DesignID3427_UNC_LiebLab tiling array 577,211 UNC-Chapel Hill 2006-12-01 NimbleGen Inc. Caenorhabditis elegans
Caenorhabditis elegans		 Tiling Array in situ oligonucleotide, NimbleGen_DesignID3427_UNC_LiebLab tiling array,
3 GPL4628 Nimblegen Dana expression custom array/2005-06-03_D_ananassae_50mer 391,015 NIDDK, NIH 2006-12-05 NimbleGen Systems Inc. Drosophila ananassae
Drosophila ananassae		 Oligo Array in situ oligonucleotide, Nimblegen Dana expression custom array/2005-06-03_D_ananassae_50mer, Nimblegen custom design array for Drosophila species expression: An average of 10 array element probes per predicted genes was selected without-bias vis-a-vis position within the gene model. Sources of gene predictions include EIS (Annotations from Eisen lab v.1.0, Feb. 2005), GID (ab-initio GeneID predictions on draft assembly), and GBK (EST sequence from GeneBank). Probes have been remapped to final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and genome annotation (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation). Arrays are described in detail on http://intramural.niddk.nih.gov/research/multifly/multifly.htm.
4 GPL4629 Nimblegen Drosophila melanogaster expression array/2005-10-17_Dmel4_60mer_exp 391,015 NIDDK, NIH 2006-12-05 NimbleGen Systems Inc. Drosophila melanogaster
Drosophila melanogaster		 Oligo Array in situ oligonucleotide, Nimblegen Drosophila melanogaster expression array/2005-10-17_Dmel4_60mer_exp,
5 GPL4630 Nimblegen Dmoj expression custom array/2005-06-03_D_mojavensis_50mer 391,015 NIDDK, NIH 2006-12-05 NimbleGen Systems Inc. Drosophila mojavensis
Drosophila mojavensis		 Oligo Array in situ oligonucleotide, Nimblegen Dmoj expression custom array/2005-06-03_D_mojavensis_50mer, Nimblegen custom design array for Drosophila species expression: An average of 10 array element probes per predicted genes was selected without-bias vis-a-vis position within the gene model. Sources of gene predictions include EIS (Annotations from Eisen lab v.1.0, Feb. 2005), GID (ab-initio GeneID predictions on draft assembly), and GBK (EST sequence from GeneBank). Probes have been remapped to final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and genome annotation (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation). Arrays are described in detail on http://intramural.niddk.nih.gov/research/multifly/multifly.htm.
6 GPL4631 Nimblegen Dpse expression custom array/2005-06-03_D_pseudoobscura_50mer 391,015 NIDDK, NIH 2006-12-05 NimbleGen Systems Inc. Drosophila pseudoobscura
Drosophila pseudoobscura		 Oligo Array in situ oligonucleotide, Nimblegen Dpse expression custom array/2005-06-03_D_pseudoobscura_50mer, Nimblegen custom design array for Drosophila species expression: An average of 10 array element probes per predicted genes was selected without-bias vis-a-vis position within the gene model. Sources of gene predictions include EIS (Annotations from Eisen lab v.1.0, Feb. 2005), GID (ab-initio GeneID predictions on draft assembly), and GBK (EST sequence from GeneBank). Probes have been remapped to final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and genome annotation (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation). Arrays are described in detail on http://intramural.niddk.nih.gov/research/multifly/multifly.htm.
7 GPL4633 Nimblegen Dvir expression custom array/2005-06-03_D_virilis_50mer 391,015 NIDDK, NIH 2006-12-05 NimbleGen Systems Inc. Drosophila virilis
Drosophila virilis		 Oligo Array in situ oligonucleotide, Nimblegen Dvir expression custom array/2005-06-03_D_virilis_50mer, Nimblegen custom design array for Drosophila species expression: An average of 10 array element probes per predicted genes was selected without-bias vis-a-vis position within the gene model. Sources of gene predictions include EIS (Annotations from Eisen lab v.1.0, Feb. 2005), GID (ab-initio GeneID predictions on draft assembly), and GBK (EST sequence from GeneBank). Probes have been remapped to final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and genome annotation (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation). Arrays are described in detail on http://intramural.niddk.nih.gov/research/multifly/multifly.htm.
8 GPL4634 Nimblegen Dyak expression custom array/2005-06-03_D_yakuba_50mer 391,015 NIDDK, NIH 2006-12-05 NimbleGen Systems Inc. Drosophila yakuba
Drosophila yakuba		 Oligo Array in situ oligonucleotide, Nimblegen Dyak expression custom array/2005-06-03_D_yakuba_50mer, Nimblegen custom design array for Drosophila species expression: An average of 10 array element probes per predicted genes was selected without-bias vis-a-vis position within the gene model. Sources of gene predictions include EIS (Annotations from Eisen lab v.1.0, Feb. 2005), GID (ab-initio GeneID predictions on draft assembly), and GBK (EST sequence from GeneBank). Probes have been remapped to final genome assemblies (Comparative Assembly Freeze 1 CAF1, http://rana.lbl.gov/drosophila/caf1.html) and genome annotation (GLEANR set, http://rana.lbl.gov/~venky/AAA/freeze_20061030/protein_coding_gene/GLEANR/annotation). Arrays are described in detail on http://intramural.niddk.nih.gov/research/multifly/multifly.htm.
9 GPL4425 sea urchin tiling array urchin1 (BC456) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin1 (BC456), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
10 GPL4426 sea urchin tiling array urchin2 (BC442) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin2 (BC442), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
11 GPL4427 sea urchin tiling array urchin3 (BC457) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin3 (BC457), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
12 GPL4428 sea urchin tiling array urchin4 (BC459) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin4 (BC459), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
13 GPL4429 sea urchin tiling array urchin5 (BC455) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin5 (BC455), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
14 GPL4430 sea urchin tiling array urchin6 (BC458) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin6 (BC458), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
15 GPL4431 sea urchin tiling array urchin7 (BC460) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin7 (BC460), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
16 GPL4432 sea urchin tiling array urchin8 (BC461) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin8 (BC461), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
17 GPL4433 sea urchin tiling array urchin9 (BC446) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin9 (BC446), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
18 GPL4434 sea urchin tiling array urchin10 (BC448) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin10 (BC448), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
19 GPL4435 sea urchin tiling array urchin11 (BC452) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin11 (BC452), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
20 GPL4436 sea urchin tiling array urchin12 (BC451) 390,407 Systemix Institute 2006-10-13 NASA Ames Research Center Strongylocentrotus purpuratus
Strongylocentrotus purpuratus		 Tiling Array in situ oligonucleotide, sea urchin tiling array urchin12 (BC451), 50-mer probes tiling the entire S. purpuratus genome Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
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