Gene Expression Omnibus (GEO) Overview

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DataSet	:	Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample	:	Biological materials.
platform	:	Methods or instruments used for the gene expression profilings.

Human
(102)

Invertebrates
(30)

Phages
(0)

SAGE NlaIII
(0)

SAGE RsaI
(0)

SAGE Sau3A
(0)

MPSS
(0)

GeneChip
(1)

Tiling Array
(0)

cDNA Array
(3)

Oligo Array
(13)

Bead Array
(0)

Protein Array
(0)

Antibody
(0)

RT-PCR
(0)

HT-Seq
(12)

Other
(1)

All
(30)

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	Platform ID	Title	Number of the probes	Institute	Submission date	Manufacturer	Species	Platform class	Reasoning of the classification Keywords used for the classification are shown with bold font.
1	GPL10125	Nimblegen Rhipicephalus microplus 385K microarray	385,770	DEEDI	2010-03-03	NimbleGen Systems Inc.	Rhipicephalus microplus	Oligo Array	in situ oligonucleotide, Nimblegen Rhipicephalus microplus 385K microarray,
2	GPL10171	Agilent-015554 RSTA Purple sea urchin 244K v.2.0	238,389	Stanford University	2010-03-12	Agilent Technologies Inc.	Strongylocentrotus purpuratus	Oligo Array	in situ oligonucleotide, Agilent-015554 RSTA Purple sea urchin 244K v.2.0,
3	GPL10018	Agilent Daphnia magna 4x44k oligonucleotide array	45,220	UMass Boston	2010-02-05	Agilent Technologies	Daphnia magna	Oligo Array	in situ oligonucleotide, Agilent Daphnia magna 4x44k oligonucleotide array, AMDID#:020740 ONLY CLONES OF INTEREST HAVE BEEN IDENTIFIED WITH GENBANK ACCESSION NUMBER.
4	GPL10094	Agilent-020186 C. elegans (V2) Gene Expression Microarray (Feature Number version)	45,220	Agilent Technologies	2010-02-22	Agilent Technologies	Caenorhabditis elegans	Oligo Array	in situ oligonucleotide, Agilent-020186 C. elegans (V2) Gene Expression Microarray (Feature Number version), Caenorhabditis elegans (Nematode) Oligo Microarray Arrays of this design have barcodes that begin with 16020186 or 2520186. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions. *** A different version of this platform with the Agilent Probe names in the ID column is assigned accession number GPL11346
5	GPL10103	Agilent-019315 Sarcophaga crassipalpis custom cDNA array	45,220	University of Florida	2010-02-25	Agilent	Sarcophaga crassipalpis	Oligo Array	in situ oligonucleotide, Agilent-019315 Sarcophaga crassipalpis custom cDNA array, Probesets: UF_Scr_NF_100001 to UF_Scr_NF_100103: four forward probes for each NCBI record of Sarcophaga crassipalpis genes Probesets: UF_Scr_NM_100104 to UF_Scr_NM_100206: four reverse (minus strand) probes for each NCBI Sarcophaga crassipalpis record Probesets: UF_Scr_AF_100207 to UF_Scr_AF_123337: two forward probes for each annotated S. crassipalpis EST Probesets: UF_Scr_AM_123338 to UF_Scr_AM_134993: one reverese (minus strand) probe for each annotated S. crassipalpis EST Probesets: UF_Scr_UN_134994 from UF_Scr_UN_145629: one forward probe for each unannotated S. crassipalpis EST
6	GPL10111	Agilent-025188 Custom Agilent Myzus Persicae Array	45,220	Rothamsted Research	2010-02-26	Agilent	Myzus persicae	Oligo Array	in situ oligonucleotide, Agilent-025188 Custom Agilent Myzus Persicae Array, All sequences on which the array probes are designed are publically available at http://www.aphidbase.com/aphidbase/downloads under Myzus454(fasta) and MyzusSanger(fasta).
7	GPL10238	Cardiff Caenorhabditis elegans 20K oligo array (Operon oligonucleotide set version 1.1)	19,873	Cardiff University	2010-03-22	Cardiff School of Bioscience, Cardiff University	Caenorhabditis elegans	Oligo Array	spotted oligonucleotide, Cardiff Caenorhabditis elegans 20K oligo array (Operon oligonucleotide set version 1.1), Created from Operon C. elegans oligonucleotide set version 1.1. 60-65mer oligonuleotides.
8	GPL10075	UMDNJ Trypanosoma brucei 19K	19,200	University of Medicine and Dentistry of New Jersey-New Jersey Medical School	2010-02-19	Pathogen Functional Genomic Resources Center	Trypanosoma brucei	Oligo Array	spotted oligonucleotide, UMDNJ Trypanosoma brucei 19K, Pathogen Functional Genomics Resource Center Trypanosoma brucei version 3 70mer oligonucleotide 2x replicate oligo printing
9	GPL10221	JCVI PFGRC Trypanosoma brucei 19K v4 array designed primarily based on strain TREU927	9,094	J. Craig Venter Institute	2010-03-17	JCVI PFGRC	Trypanosoma brucei	Oligo Array	spotted oligonucleotide, JCVI PFGRC Trypanosoma brucei 19K v4 array designed primarily based on strain TREU927, This set includes 8375 oligonucleotides, has 19200 spots distributed in 48 blocks.
10	GPL10000	[Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5)	7,253	University of Pennsylvania	2010-02-02	Affymetrix	Toxoplasma gondii	GeneChip	in situ oligonucleotide, [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5), Affymetrix custom CDF [Tgondiia520372]
11	GPL10014	UWBMC Armigeres subalbatus 18K v1.0	6,143	University of Wisconsin-Madison	2010-02-04	University of Wisconsin Gene Expression Center	Armigeres subalbatus	Oligo Array	spotted oligonucleotide, UWBMC Armigeres subalbatus 18K v1.0,
12	GPL10255	UCSB/Hofmann Mytilus californianus 5K v1.0	4,992	University of South Carolina	2010-03-26	Oregon State University - Center for Genome Research and Biocomputing	Mytilus californianus	cDNA Array	spotted DNA/cDNA, UCSB/Hofmann Mytilus californianus 5K v1.0,
13	GPL10269	Mussel MytArray 1.1	4,560	University of Padova	2010-03-30	C.R.I.B.I.-Biotechnology Centre and Dept. Biology (University of Padova)	Mytilus galloprovincialis	cDNA Array	spotted DNA/cDNA, Mussel MytArray 1.1,
14	GPL10043	Tdalmanni Agilent 44K Oligoarray CGH slide	3,698	University of Maryland	2010-02-12	Agilent	Teleopsis dalmanni	Oligo Array	in situ oligonucleotide, Tdalmanni Agilent 44K Oligoarray CGH slide,
15	GPL9992	Chiton 4x2K array	2,240	Queensland University of Technology	2010-01-29	Combimatrix	Acanthopleura hirtosa	Oligo Array	in situ oligonucleotide, Chiton 4x2K array,
16	GPL10244	Acropora palmata 2K EST array	2,051	University of North Carolina, Wilmington	2010-03-23	University of California, Merced	Acropora palmata	cDNA Array	spotted DNA/cDNA, Acropora palmata 2K EST array,
17	GPL9993	UMR BiO3P-INRA Acyrthosiphon pisum 0.4K miRNAs v1	363	INRA	2010-01-29	LC-Sciences	Acyrthosiphon pisum	Oligo Array	spotted oligonucleotide, UMR BiO3P-INRA Acyrthosiphon pisum 0.4K miRNAs v1,
18	GPL9968	Allergochip for asthma diagnosis	103	University of Perugia	2010-01-24	Crisanti's Lab-Imperial College	Dermatophagoides pteronyssinus	Other	spotted peptide or protein, Allergochip for asthma diagnosis,
19	GPL10061	Illumina Genome Analyzer II (Drosophila yakuba)	0		2010-02-17		Drosophila yakuba	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Drosophila yakuba),
20	GPL10069	Illumina Genome Analyzer II (Drosophila melanogaster x Drosophila sechellia)	0		2010-02-19		Drosophila melanogaster x Drosophila sechellia	HT Sequencing	high-throughput sequencing, Illumina Genome Analyzer II (Drosophila melanogaster x Drosophila sechellia),

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