Gene Expression Omnibus (GEO) Overview Version：2013-06-15Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.
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Data Unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(73)		   Primates
(0)		   Rodents
(51)		   Mammals
(15)		   Vertebrates
(15)		   Invertebrates
(43)		   Plants
(47)		   Bacteria
(43)		   Viruses
(1)		   Phages
(0)		   Unclassified
(12)		   All
(306)		  
  SAGE NlaIII
(0)		   SAGE RsaI
(0)		   SAGE Sau3A
(0)		   MPSS
(0)		   GeneChip
(2)		   Tiling Array
(10)		   cDNA Array
(5)		   Oligo Array
(16)		   Bead Array
(0)		   Protein Array
(0)		   Antibody
(0)		   RT-PCR
(0)		   HT-Seq
(10)		   Other
(0)		   All
(43)		  
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Platform ID Title Number of the probes Institute Submission date Manufacturer Species Platform class Reasoning of the classification
Keywords used for the classification are shown with bold font.
1 GPL11273 McIntyre D. simulans 2m v1.0 2,463,424 UF 2010-12-02 Affymetrix Drosophila simulans
Drosophila simulans		 GeneChip in situ oligonucleotide, McIntyre D. simulans 2m v1.0,
2 GPL11147 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (1 of 4) 2,166,670 Indiana University 2010-10-29 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (1 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (1 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
3 GPL11148 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (2 of 4) 2,166,669 Indiana University 2010-10-29 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (2 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (2 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
4 GPL11149 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (3 of 4) 2,166,669 Indiana University 2010-10-30 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (3 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (3 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
5 GPL11150 NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (4 of 4) 2,166,669 Indiana University 2010-10-30 NimbleGen Apis mellifera
Apis mellifera		 Tiling Array in situ oligonucleotide, NimbleGen Apis mellifera 4.0 Whole-genome CGH Tiling Array Set (4 of 4), This is a Western honey bee or European honey bee (Apis mellifera) whole-genome tiling array set (4 of 4) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Custom array design.
6 GPL11201 NimbleGen Daphnia pulex Whole-genome Tiling Array Set (2 of 2) 2,060,901 Indiana University 2010-11-12 NimbleGen Daphnia pulex
Daphnia pulex		 Tiling Array in situ oligonucleotide, NimbleGen Daphnia pulex Whole-genome Tiling Array Set (2 of 2), This is a Daphnia pulex whole-genome tiling array set (2 of 2) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Daphnia pulex annotated draft genome assembly GenBank accession number: ACJG00000000.
7 GPL11200 NimbleGen Daphnia pulex Whole-genome Tiling Array Set (1 of 2) 2,060,898 Indiana University 2010-11-12 NimbleGen Daphnia pulex
Daphnia pulex		 Tiling Array in situ oligonucleotide, NimbleGen Daphnia pulex Whole-genome Tiling Array Set (1 of 2), This is a Daphnia pulex whole-genome tiling array set (1 of 2) in HD2 1-plex format with 2.1M probes, manufactured by Roche NimbleGen. Daphnia pulex annotated draft genome assembly GenBank accession number: ACJG00000000.
8 GPL11301 Agilent-021781 1X1M Drosophila Tiling Array 974,016 The University of Chicago 2010-12-09 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Agilent-021781 1X1M Drosophila Tiling Array, resolution: 160bp genome version: dm2
9 GPL11023 Agilent_Dm_5.1_1M_tiling 953,353 Duke University Medical Center 2010-10-07 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Agilent_Dm_5.1_1M_tiling, high resolution tiling array for modENCODE. Average probe spacing of 117 bp for Drosophila genome (5.1) and unique heterochromatin scaffolds.
10 GPL11290 Agilent_Dm_5.1_440K_tiling 420,288 Duke University Medical Center 2010-12-07 Agilent Technologies Drosophila melanogaster
Drosophila melanogaster		 Tiling Array in situ oligonucleotide, Agilent_Dm_5.1_440K_tiling, tiling array for modENCODE. Average probe spacing of 448 bp for Drosophila genome (5.1).
11 GPL11296 Agilent Caenorhabditis elegans Alternative Splicing 244K Array 240,997 University of Toronto 2010-12-08 Agilent Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, Agilent Caenorhabditis elegans Alternative Splicing 244K Array, Agilent-015631
12 GPL11278 NimbleGen Daphnia pulex Expression Array 12x135k (All Probes) 134,558 Indiana University 2010-12-03 NimbleGen Daphnia pulex
Daphnia pulex		 Oligo Array in situ oligonucleotide, NimbleGen Daphnia pulex Expression Array 12x135k (All Probes), This is a custom design whole Daphnia genome expression array in 12-plex format manufactured by Roche Nimblegen. Genes based on Daphnia pulex annotated draft genome assembly GenBank accession number: ACJG00000000.
13 GPL11065 Affymetrix Toxoplasma gondii GeneChip Individual Expression Probes (Tgondiia520372) 102,780 Washington University School of Medicine 2010-10-16 Affymetrix Toxoplasma gondii
Toxoplasma gondii		 GeneChip in situ oligonucleotide, Affymetrix Toxoplasma gondii GeneChip Individual Expression Probes (Tgondiia520372), Please see http://ancillary.toxodb.org/docs/Array-Tutorial.html for a complete description of the array design as well as for library files.
14 GPL11172 Agilent-023462 Desert and Migratory Locust EST Array 45,220 Katholieke Universiteit Leuven 2010-11-08 Agilent Technologies Locusta migratoria,Schistocerca gregaria
Locusta migratoria,Schistocerca gregaria		 Oligo Array in situ oligonucleotide, Agilent-023462 Desert and Migratory Locust EST Array, We recently developed an 'expressed sequence tag' (EST) database derived from the desert locust (Schistocerca gregaria) central nervous system [Badisco L, Huybrechts J, Simonet G, Verlinden H, Marchal E et al. (2011) Transcriptome analysis of the desert locust central nervous system: production and annotation of a Schistocerca gregaria EST database. PLoS One 6: e17274.]. The microarray platform contains probes corresponding to all these S. gregaria EST sequences and to all available GenBank S. gregaria transcript sequences. The migratory locust (Locusta migratoria) is a species related to the desert locust for which EST sequence information is also available [Ma ZY, Yu J, Kang L (2006) LocustDB: a relational database for the transcriptome and biology of the migratory locust (Locusta migratoria). BMC Genomics 7: 11.]. Therefore, the S. gregaria transcript sequences included in the microarray design were complemented with all L. migratoria EST sequences having no blastn orthologue (blastn hits producing E < 1E-10 were considered orthologs) in the S. gregaria set. The locust microarrays were designed by means of the eArray system (Agilent Technologies). Probes were designed according to the following criteria: (i) probe length: 60 nucleotides, (ii) two probes per target sequence (best probe methodology) and (iii) probe orientation: sense. Other parameters were set at default settings. In total 20,755 unique locust transcript sequences (12,783 S. gregaria and 7,972 L. migratoria sequences) were represented on the arrays. (EST sequences are publically available in GenBank.)
15 GPL11346 Agilent-020186 C. elegans (V2) Gene Expression Microarray (Probe Name version) 43,663 Agilent Technologies 2010-12-21 Agilent Technologies Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, Agilent-020186 C. elegans (V2) Gene Expression Microarray (Probe Name version), Caenorhabditis elegans (Nematode) Oligo Microarray Arrays of this design have barcodes that begin with 16020186 or 2520186. *** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL10094.
16 GPL11323 Agilent-020186 Caenorhabditis elegans (V2) Gene Expression Microarray (Probe Name version) 43,603 Hamamatsu University School of Medicine 2010-12-15 Agilent Technologies Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, Agilent-020186 Caenorhabditis elegans (V2) Gene Expression Microarray (Probe Name version), Caenorhabditis elegans (Nematode) Oligo Microarray
17 GPL11353 Oyster Crassostrea gigas microarray v1 31,918 Universite de caen 2010-12-22 Agilent Crassostrea gigas
Crassostrea gigas		 Oligo Array in situ oligonucleotide, Oyster Crassostrea gigas microarray v1, design id 025380 4 x 44K control grid IS-45220-4-V1_4x44K_GX_EQC_V20060608
18 GPL11210 Silkworm 23K oligo array version 2.0 24,283 Southwest University 2010-11-15 CapitalBio and Southwest University Bombyx mori
Bombyx mori		 Oligo Array spotted oligonucleotide, Silkworm 23K oligo array version 2.0,
19 GPL11171 NimbleGen Caenorhabditis elegans Gene expression 4x72K Array 23,336 NimbleGen Systems, Inc. 2010-11-08 NimbleGen Caenorhabditis elegans
Caenorhabditis elegans		 Oligo Array in situ oligonucleotide, NimbleGen Caenorhabditis elegans Gene expression 4x72K Array, Design Name: CE WS160 60mer expr X4 Format: 4x72K Source: Wormbase Build: 160 Probe Length: 60mer Genes: 23,336 Probes/ Target: 3 Replicates: 1
20 GPL11228 Giardia lamblia 20K v2 array 20,160 Tufts University 2010-11-17 JCVI PFGRC Giardia intestinalis
Giardia intestinalis		 Oligo Array spotted oligonucleotide, Giardia lamblia 20K v2 array,
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