Gene Expression Omnibus (GEO) Overview Version:2013-04-06Japanese page
An overview of the GEO entries broken down by the measurement platforms and the features of the measured samples.

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Data unit : [ DataSet / Sample / Platform ] Show explanation>> <<Hide explanation
DataSet : Series(GSE) x Platform(GPL). A set of related gene expression data.
Sample : Biological materials.
platform : Methods or instruments used for the gene expression profilings.
The numbers shown in the tabs are the numbers of the data (series, samples or platforms) belonging to the groups.
  Human
(17,885)
  Primates
(199)
  Rodents
(12,016)
  Mammals
(754)
  Vertebrates
(1,115)
  Invertebrates
(3,796)
  Plants
(6,479)
  Bacteria
(2,920)
  Viruses
(51)
  Phages
(4)
  Unclassified
(249)
  All
(45,516)
 
  SAGE NlaIII
(19)
  SAGE RsaI
(0)
  SAGE Sau3A
(0)
  MPSS
(1)
  GeneChip
(0)
  Tiling Array
(0)
  cDNA Array
(0)
  Oligo Array
(0)
  Bead Array
(0)
  Protein Array
(0)
  Antibody
(0)
  RT-PCR
(2)
  HT-Seq
(0)
  Other
(5)
  All
(3,796)
 
1   |   2   |   3   |   4   |   5      »      [190]
Title Platform Institute Submission date Species Data size
(probes x samples)
Sample NCBI
FTP
site
Animal Plant  
brain blood connective reproductive muscular digestive liver lung urinary endo/exo-crine embryo adult aerial structure young aerial structure root meristem/growing tissue flower/sexual organ seed/fruit/grain pooled unclassified
1 Expression data from Toxoplasma gondii mutants and wild-type during bradyzoite differentiation in vitro (GSE23174) [GeneChip] [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) (GPL16542) University of Vermont 2010-07-26 Toxoplasma gondii
Toxoplasma gondii
638,503
(8,993 x 71)
71 by_platform
by_series
2 Toxoplasma gondii lysine acetyltransferase GCN5-A functions in the cellular response to alkaline stress and expression of cyst genes (GSE22100) [GeneChip] [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) (GPL16542) Indiana University 2010-06-02 Toxoplasma gondii
Toxoplasma gondii
143,888
(8,993 x 16)
16 by_platform
by_series
3 Transcriptome analysis of oocyst, tachyzoite, and bradyzoite development in the type II Toxoplasma gondii strain M4. (GSE32427) [GeneChip] [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) (GPL16542) Stanford University 2011-09-27 Toxoplasma gondii
Toxoplasma gondii
125,902
(8,993 x 14)
2 2 10 by_platform
by_series
4 Effect of AP2IX-9 overexpression on CTG transcriptome upon alkaline treatment (GSE36300) [GeneChip] [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) (GPL16542) Montana State University 2012-03-06 Toxoplasma gondii
Toxoplasma gondii
98,923
(8,993 x 11)
11 by_platform
by_series
5 Toxoplasma gondii response to monensin (GSE25177) [GeneChip] [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) (GPL16542) University of Idaho 2010-11-05 Toxoplasma gondii
Toxoplasma gondii
53,958
(8,993 x 6)
6 by_platform
by_series
6 Discovery of a splicing regulator required for cell cycle progression (GSE43315) [GeneChip] [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) (GPL16542) University of South Florida 2013-01-07 Toxoplasma gondii
Toxoplasma gondii
53,958
(8,993 x 6)
6 by_platform
by_series
7 A nucleolar AAA-NTPase is required for Toxoplasma gondii division (GSE43784) [GeneChip] [Tgondiia520372] ToxoDB Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372.cdf) (GPL16542) University of South Florida 2013-01-27 Toxoplasma gondii
Toxoplasma gondii
53,958
(8,993 x 6)
6 by_platform
by_series
8 Expression data for various strains of Toxoplasma gondii chosen from canonical types (i.e., I,II, and III) (GSE22315) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5) (GPL10000) University of Pennsylvania 2010-06-11 Toxoplasma gondii
Toxoplasma gondii
166,819
(7,253 x 23)
23 by_platform
by_series
9 Expression profiling of the three clonotypic lineages of Toxoplasma gondii (GSE20145) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5) (GPL10000) University of Pennsylvania 2010-02-02 Toxoplasma gondii
Toxoplasma gondii
65,277
(7,253 x 9)
9 by_platform
by_series
10 72hr Toxoplasma gondii bradyzoite induction (GSE22258) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 5) (GPL10000) University of Pennsylvania 2010-06-09 Toxoplasma gondii
Toxoplasma gondii
14,506
(7,253 x 2)
2 by_platform
by_series
11 Coordinated Progression Through Two Subtranscriptomes Underlies the Tachyzoite Cycle of Toxoplasma gondii (GSE19092) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) Washington University School of Medicine 2009-11-18 Toxoplasma gondii
Toxoplasma gondii
253,260
(9,045 x 28)
28 by_platform
by_series
12 Types I GT1, II Me49, III CTGara strains - tachyzoite and Compound 1 (GSE16037) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) Washington University School of Medicine 2009-05-10 Toxoplasma gondii
Toxoplasma gondii
108,540
(9,045 x 12)
12 by_platform
by_series
13 Global gene expression differences between GT1, RH-ERP2009 and RH-JSR (GSE16115) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) Washington University School of Medicine 2009-05-14 Toxoplasma gondii
Toxoplasma gondii
81,405
(9,045 x 9)
9 by_platform
by_series
14 Global transcriptome analysis indicates that depletion of rps13 and ribosomes leads to cell cycle arrest in G1 (GSE20616) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) Washington University School of Medicine 2010-03-03 Toxoplasma gondii
Toxoplasma gondii
72,360
(9,045 x 8)
8 by_platform
by_series
15 Cactin is essential for G1 progression in Toxoplasma gondii (GSE36432) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) Boston College 2012-03-12 Toxoplasma gondii
Toxoplasma gondii
72,360
(9,045 x 8)
8 by_platform
by_series
16 Cell cycle-dependent, intercellular transmission of Toxoplasma gondii is accompanied by marked changes in parasite gene expression. (GSE20480) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: ToxoDB version 4) (GPL7186) Washington University School of Medicine 2010-02-22 Toxoplasma gondii
Toxoplasma gondii
54,270
(9,045 x 6)
6 by_platform
by_series
17 Expression and genomic hybridization data for the Toxoplasma gondii I X III cross (GSE26608) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372minusI_IIIsnp) (GPL11447) Washington University School of Medicine 2011-01-13 Toxoplasma gondii
Toxoplasma gondii
1,067,310
(9,045 x 118)
118 by_platform
by_series
18 Expression Quantitative Trait Locus (eQTL) Mapping of Stage-specific Gene Expression in Progeny from a type I X III Genetic Cross of Toxoplasma gondii (GSE26558) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372minusI_IIIsnp) (GPL11447) Washington University School of Medicine 2011-01-11 Toxoplasma gondii
Toxoplasma gondii
723,600
(9,045 x 80)
80 by_platform
by_series
19 Genomic hybridizations for the parents and progeny of the Toxoplasma gondii I X III genetic cross (GSE26607) [GeneChip] [Tgondiia520372] Affymetrix Toxoplasma gondii Custom GeneChip (CDF: Tgondiia520372minusI_IIIsnp) (GPL11447) Washington University School of Medicine 2011-01-13 Toxoplasma gondii
Toxoplasma gondii
343,710
(9,045 x 38)
38 by_platform
by_series
20 Expression data from TSA-treated Plasmodium (GSE41567) [GeneChip] [scrMalariaa] Winzeler Lab Plasmodium falciparum expression array 5312 v2 (GPL16175) University of California San Diego 2012-10-12 Plasmodium falciparum
Plasmodium falciparum
15,396
(5,132 x 3)
3 by_platform
by_series
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